A variety of means, including forelimb proportions and shell bone histology have been used to infer the paleoecology of extinct turtles. However, the height-to-width ratio of the shell (as a one-parameter shell model) has been dismissed because of its unreliability, and more complex aspects of shell geometry have generally been overlooked. Here we use a more reliable, three-parameter geometric model of the shell outline in anterior view as a means to assess turtle paleoecology. The accuracy of predictions of extant turtle ecology based on our three-parameter shell model is comparable to that derived from forelimb proportions when distinguishing between three ecological classes (terrestrial, semiaquatic, and aquatic). Higher accuracy is obtained when distinguishing between two classes (terrestrial and non-terrestrial), because the contours of aquatic and semiaquatic turtles are often very similar. Our model classifies Proterochersis robusta, a stem turtle from the Late Triassic of Germany, as non-terrestrial, and likely semiaquatic. Our method, combined with inferences based on limb proportions, indicates a diverse range of ecotypes represented by Late Triassic stem turtles. This implies that the ecological diversification of stem-group turtles may have been rapid, or that a substantial period of currently cryptic diversification preceded the first fossil appearance of the turtle stem lineage during the Late Triassic.

The Burgess Shale-type Lagerstätten of the Early Cambrian Maotianshan Shale record an apparently sudden conquest of pelagic niches by ten phyla of metazoans. One of these phyla is Chaetognatha, a group of predatory marine worms. Given their role as major predators in modern planktonic ecosystems, the chaetognaths discovered in the Maotianshan Shale (Yunnan Province, South China) suggest that the pelagos at the time was already quite complex. Modern chaetognaths, however, can be divided into benthic and pelagic forms; the pelagic nature of Eognathacantha ercainella should therefore be validated by strong morphological evidence.

Knowing that planktonic animals present morphological adaptations that increase their buoyancy, we studied the drag produced during the active phase of chaetognath locomotion for the modern forms Paraspadella gotoi (benthic) and Sagitta elegans (pelagic). By using a motion model developed by Jordan in 1992, we could calculate the resistive force produced by the undulatory movement of chaetognaths' bodies.

This mechanistic approach evaluates the effect of three motion parameters (relative speed, total length, and tail ratio) on the drag force produced during locomotion. Our results show that the increase of size contributes to higher drag while the shorter tail of the pelagic form balances this effect by reducing the wetted surface subject to friction. For chaetognaths, therefore, a bigger body (both in length and width) and a shorter tail indicate a pelagic lifestyle, a finding that can be applied to the study of the fossil Eognathacantha ercainella. A discriminant analysis can confirm that the Early Cambrian chaetognath presents a pelagic morphology with similarities to modern bathypelagic and mesopelagic species.

Particle size reduction is a primary means of improving efficiency in herbivores. The mode of food particle size reduction is one of the main differences between herbivorous birds (gizzard) and mammals (teeth). For a quantitative comparison of the efficiency of food comminution, we investigated mean fecal particle sizes (MPS) in 14 herbivorous bird species and compared these with a data set of 111 non-ruminant herbivorous mammal species. In general MPS increased with body mass, but there was no significant difference between birds and mammals, suggesting a comparable efficiency of food processing by gizzards and chewing teeth. The results lead to the intriguing question of why gizzard systems have evolved comparatively rarely among amniote herbivores. Advantages linked to one of the two food comminution systems must, however, be sought in different effects other than size reduction itself. In paleoecological scenarios, the evolution of “dental batteries,” for example in ornithopod dinosaurs, should be considered an advantage compared to absence of mastication, but not compared to gizzard-based herbivory.

Exploring patterns in the evolution of seed plant reproductive morphology within a functional context offers a framework in which to identify and evaluate factors that potentially drive reproductive evolution. Conifers are a particularly useful group for studies of this kind because they have a long geologic history and their reproductive organs are borne on separate structures with discrete functions. Multivariate analysis of morphological data collected from pollen-producing and seed-producing cones of Paleozoic, Mesozoic, and extant conifer species shows that seed cones underwent a significant expansion of morphological diversity that began during the Early-Middle Jurassic and has continued into the present day. In contrast, pollen cones show significantly lower levels of morphological diversity and exhibit similar basic morphologies throughout conifer evolutionary history. The increase in seed cone diversity through time is primarily the result of two novel structural and organizational features that evolved independently in different conifer families during the Mesozoic: robust, tightly packed cones in members of Araucariaceae, Cupressaceae sensu lato, and Pinaceae, and highly reduced, fleshy cones or solitary seeds in Podocarpaceae, Taxaceae, and some members of Cupressaceae sensu stricto. In extant conifers, these cone morphologies are associated with species that have strong interactions with vertebrate seed predators, seed dispersers, or a combination of both. This suggests that increases in the strength and complexity of biotic interactions in the Jurassic and Cretaceous were a primary driver of conifer reproductive evolution, and that patterns of character evolution relate to the increasing importance of cone tissue in seed protection and seed dispersal through time.

Macrofossils from woodrat (Neotoma) middens serve as an important proxy for reconstructing past vegetation in arid and semiarid regions of North America. The presence/absence of plant macrofossils in middens can provide valuable information on temporal and spatial patterns of plant migration and range boundaries. The primary aim of this study was to determine how local plant abundance, distance of plant populations from midden sites, and species population density on the landscape affect the probability of occurrence of macrofossils in middens. The study was designed with the primary intent of determining the reliability of middens in detecting scattered populations of Pinus ponderosa. We analyzed macrofossil assemblages from 42 modern woodrat middens from West Carrizo Canyon in southeastern Colorado, near the current eastern range margin of Pinus ponderosa. We compared midden contents with composition of the surrounding vegetation, measuring distance from the midden to the nearest individual of selected plant species, and the percent cover of each species within 30 m of the midden. We used this information to model the probability of species presence in a midden across a range of population densities on the landscape. Macrofossils of Juniperus spp., Quercus gambelii, and Opuntia spp. were consistently found in middens regardless of their local abundance in vegetation, although populations occurred within 30 m of all middens. Pinus edulis and P. ponderosa occurred in nearly all middens within 20–30 m of individual trees. P. ponderosa was rare in middens >20–30 m away from individual trees. Results of a simple simulation model suggest that middens become absolutely reliable indicators of P. ponderosa presence on the landscape only when average tree density exceeds 50 stems ha−1. Woodrats reliably collected macrofossils of Pinus edulis, P. ponderosa, Juniperus spp., Quercus gambelii, and Opuntia spp. when populations of these taxa occur within 20–30 m of a midden site. Woodrats did not collect P. ponderosa when the nearest individuals were more than 30 m away. Low-density populations of these and other species may be difficult to detect in fossil woodrat-midden series owing to reduced probability that individuals grow within foraging distance of the middens. Data from this and similar studies can be used to construct and parameterize a forward model of macrofossil representation in woodrat middens.

Ecological theory predicts an inverse association between population size and extinction risk, but most previous paleontological studies have failed to confirm this relationship. The reasons for this discrepancy between theory and observation remain poorly understood. In this study, we compiled a global database of gastropod occurrences and collection-level abundances spanning the Early Permian through Early Jurassic (Pliensbachian). Globally, the database contains 5469 occurrences of 496 genera and 2156 species from 839 localities. Within the database, 30 collections distributed across seven stages contain at least 75 specimens and ten genera—our minimum criteria for within-collection analysis of extinction selectivity. We use logistic regression analysis, based on global and local measures of population size and stage-level extinction patterns in Early Permian through Early Jurassic marine gastropods, to assess the relationship between abundance and extinction risk. We find that global genus occurrence frequency is inversely associated with extinction risk (i.e., positively associated with survival) in 15 of 16 stages examined, statistically significantly so in five stages. Although correlation between geographic range and occurrence frequency may account for some of this association, results from multivariable regression analysis suggest that the association between occurrence frequency and extinction risk is largely independent of geographic range. Within local assemblages, abundance (number of individuals) is also inversely associated with extinction risk. The strength of association is consistent across time and modes of fossil preservation. Effect strength is poorly constrained, particularly in analyses of local collections. In addition to limited power due to small sample size, this poor constraint may result from confounding by ecological variables not controlled for in the analyses, by taphonomic or collection biases, or from non-monotonic relationships between abundance and extinction risk. Two factors are likely to account for the difference between our results and those of most previous studies. First, many previous studies focused on the end-Cretaceous mass extinction event; the extent to which these results can be generalized to other intervals remains unclear. Second, previous findings of nonselective extinction could result from insufficient statistical power rather than the absence of an underlying effect, because nonselective extinction is generally used as the null hypothesis for statistical convenience. Survivorship patterns in late Paleozoic and early Mesozoic gastropods suggest that abundance has been a more important influence on extinction risk through the Phanerozoic than previously appreciated.

A modern Lesser Flamingo (Phoeniconaias minor) assemblage was collected along the shoreline of Lake Emakat, a saline-alkaline lake in northern Tanzania. Taphonomic analysis found the assemblage to be heavily weathered. This is likely due to the bone's heightened exposure to solar radiation and corrosive soil and water chemistries, as is expected to occur in such depositional environments.

Analysis found that deep, wide, longitudinal cracks penetrate the medullar cavities of both weathered and unweathered long bones. The cause and taphonomic consequence of these cracks are addressed here, using data from Lake Emakat and from controlled studies. Results support repeated (episodic) submersion, followed by drying, as the causal mechanism behind these wet-dry cracks. Mineral salt uptake by bone may explain the early appearance and prevalence of these cracks in saline-alkaline lake settings, as compared to other depositional settings.

The rate of weathering and incidence of wet-dry cracking varies significantly across limb elements. This difference correlates to element specific resistance properties to external loading forces. Heavy weathering weakens the structural integrity of bone and can accelerate its fragmentation. This can lead to bird bone loss in nearshore and ephemeral wetland settings, which may then affect resulting skeletal part, diversity, and richness profiles. Heavy weathering can therefore obscure important taphonomic and paleoecological information.

The weathering data collected here are then applied to a fossil bird assemblage from the FLK Complex, (late Pliocene), Olduvai Gorge, in Tanzania. Results provide evidence for the effect of weathering on paleoecological and behavioral interpretations. Weathering should be considered when analyzing fossil bird assemblages.

Dental morphology changes dramatically across the artiodactyl-cetacean transition, and it is generally assumed that this reflects the evolutionary change from herbivory and omnivory to carnivory. To test hypotheses regarding tooth function and diet, we studied size and position of wear facets on the lower molars and the stable isotopes of enamel samples. We found that nearly all investigated Eocene cetaceans had dental wear different from typical wear in ungulates and isotope values indicating that they hunted similar prey and processed it similarly. The only exception is the protocetid Babiacetus, which probably ate larger prey with harder skeletons. The closest relative of cetaceans, the raoellid artiodactyl Indohyus, had wear facets that resemble those of Eocene cetaceans more than they do facets of basal artiodactyls. This is in spite of Indohyus's tooth crown morphology, which is unlike that of cetaceans, and its herbivorous diet, as indicated by stable isotopes. This implies that the evolution of masticatory function preceded that of crown morphology and diet at the origin of cetaceans.

Persistence in the structure of ecological communities can be predicted both by deterministic and by stochastic theory. Evaluating ecological patterns against the neutral theory of biodiversity provides an appropriate methodology for differentiating between these alternatives. We traced the history of benthic foraminiferal communities from the Huon Peninsula, Papua New Guinea. From the well-preserved uplifted reef terrace at Bonah River we reconstructed the benthic foraminiferal communities during a 2200-year period (9000–6800 yr B.P.) of reef building during the Holocene transgressive sea-level rise. We found that the similarity of foraminiferal communities was consistently above 60%, even when comparing communities on either side of a massive volcanic eruption that smothered the existing reef system with ash. Similarly, species diversity and rank dominance were unchanged through time. However, similarity dropped dramatically in the final stages of reef growth, when accommodation space was reduced as sea-level rise slowed. We compared the community inertia index (CII) computed from the observed species abundances with that predicted from neutral theory. Despite the differences in foraminiferal community composition in the younger part of the reef sequence, we found an overall greater degree of community inertia with less variance in observed communities than was predicted from neutral theory, regardless of foraminiferal community size or species migration rate. Thus, persistent species assemblages could not be ascribed to neutral predictions. Ecological incumbency of established foraminiferal species likely prevented stochastic increases in both migrant and rare taxa at the Bonah River site. Regardless of the structuring mechanisms, our reconstruction of Holocene foraminiferal assemblages provides historical context for the management and potential restoration of degraded species assemblages.

Theoretical morphology is the scientific field in which researchers model organism growth and form. The field is developed well in studies on skeletons, especially shells. Researchers have contributed echinoid skeleton models to the field, but these have yet to be recognized collectively. We present herein the first comprehensive review for echinoid skeleton models in theoretical morphology. We apply a phylogenetic systematic analysis to those models, use the resulting consensus cladogram to classify and interrelate the models in an analogy in which they are likened to fossil specimens in a biostratigraphic record, and utilize the biostratigraphic metaphor to define trends within theoretical morphology as it applies to echinoid skeleton models.

Minimum Sample Richness (MSR) is defined as the smallest number of taxa that must be recorded in a sample to achieve a given level of inter-assemblage classification accuracy. MSR is calculated from known or estimated richness and taxonomic similarity. Here we test MSR for strengths and weaknesses by using 167 published mammalian local faunas from the Paleogene and early Neogene of the Quercy and Limagne area (Massif Central, southwestern France), and then apply MSR to 84 Oligo-Miocene faunas from Riversleigh, northwestern Queensland, Australia. In many cases, MSR is able to detect the assemblages in the data set that are potentially too incomplete to be used in a similarity-based comparative taxonomic analysis. The results show that the use of MSR significantly improves the quality of the clustering of fossil assemblages. We conclude that this method can screen sample assemblages that are not representative of their underlying original living communities. Ultimately, it can be used to identify which assemblages require further sampling before being included in a comparative analysis.