Hostname: page-component-78c5997874-xbtfd Total loading time: 0 Render date: 2024-11-19T16:54:38.155Z Has data issue: false hasContentIssue false
  • English
  • Français

Sinuicella denisonii, a new genus and species in the Peltigeraceae from western North America

Published online by Cambridge University Press:  19 March 2021

Daphne F. Stone Open the ORCID record for Daphne F. Stone [Opens in a new window] ,
Bruce McCune Open the ORCID record for Bruce McCune [Opens in a new window] ,
Carlos J. Pardo-De la Hoz Open the ORCID record for Carlos J. Pardo-De la Hoz [Opens in a new window] ,
Nicolas Magain Open the ORCID record for Nicolas Magain [Opens in a new window]  and
Jolanta Miadlikowska Open the ORCID record for Jolanta Miadlikowska [Opens in a new window]
Daphne F. Stone*
Affiliation:
Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR97331, USA
Bruce McCune
Affiliation:
Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR97331, USA
Carlos J. Pardo-De la Hoz
Affiliation:
Department of Biology, Duke University, Box 90338, Durham, NC27708, USA
Nicolas Magain
Affiliation:
Evolution and Conservation Biology, InBioS Research Center, University of Liège, Sart Tilman B22, Quartier vallée 1, Chemin de la vallée 4, B-4000Liège, Belgium
Jolanta Miadlikowska
Affiliation:
Department of Biology, Duke University, Box 90338, Durham, NC27708, USA
*
Author for correspondence: Daphne F. Stone. E-mail: daphstone@gmail.com
Get access Rights & Permissions [Opens in a new window]

Abstract

The new genus Sinuicella, an early successional lichen, was found on bare soil in Oregon, USA. The thallus is minute fruticose, grey to nearly black, branching isotomic dichotomous, branches round, 20–90 μm wide in water mount. The cortex is composed of interlocking cells shaped like jigsaw puzzle pieces. Spores are hyaline, 1-septate, 25–40(–50) × 6.5–9(–11) μm. Maximum likelihood phylogenetic analyses on multilocus data sets, first spanning the entire order Peltigerales and then restricted to Peltigeraceae with extended sampling from Solorina and Peltigera, revealed the placement of Sinuicella outside of currently recognized genera, sister to Peltigera, with high support. Based on the phylogenetic, morphological and ecological distinctness of Sinuicella, we formally introduce a new genus represented by the single species S. denisonii. The cyanobiont of S. denisonii is Nostoc from phylogroup XL, Clade 2, Subclade 3 based on the rbcLX marker.

Keywords

lichenized ascomyceteslichenized fungiNostocOregonPeltigeraPeltigeralesSolorinaUSA
Type
Standard Papers
Information
The Lichenologist , Volume 53 , Issue 2 , March 2021 , pp. 185 - 192
Check for updates
Copyright
Copyright © The Author(s), 2021. Published by Cambridge University Press on behalf of the British Lichen Society

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Bellemère, A and Letrouit-Galinou, MA (1981) The Lecanoralean ascus: an ultrastructural preliminary study. In Reynolds, DR (ed.), Ascomycete Systematics. The Luttrellian Concept. New York, Heidelberg & Berlin: Springer-Verlag, pp. 54–69.CrossRefGoogle Scholar
Berger, SA and Stamatakis, A (2011) Aligning short reads to reference alignments and trees. Bioinformatics 27, 2068–2075.CrossRefGoogle ScholarPubMed
Brodo, IM (1995) Lichens and lichenicolous fungi of the Queen Charlotte Islands, British Columbia, Canada. 1. Introduction and new records for B.C., Canada and North America. Mycotaxon 56, 135–173.Google Scholar
Carbone, I, White, JB, Miadlikowska, J, Arnold, AE, Miller, MA, Kauff, F, U'Ren, JM, May, G and Lutzoni, F (2017) T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads, and metadata visualization: an example with the Pezizomycotina tree of life. Bioinformatics 33, 1160–1168.Google ScholarPubMed
Carbone, I, White, JB, Miadlikowska, J, Arnold, AE, Miller, MA, Magain, N, U'Ren, JM and Lutzoni, F (2019) T-BAS version 2.1: Tree-Based Alignment Selector toolkit for evolutionary placement and viewing of alignments and metadata on curated and custom trees. Microbiology Resource Announcements 8, e00328-19.CrossRefGoogle ScholarPubMed
Chagnon, PL, Magain, N, Miadlikowska, J and Lutzoni, F (2019) Species diversification and phylogenetically constrained symbiont switching generated high modularity in the lichen genus Peltigera. Journal of Ecology 107, 1645–1661.CrossRefGoogle Scholar
Common, RS and Brodo, IM (1995) Bryoria sect. Sibdivergentes recognized as the new genus Nodobryoria (lichenized Ascomycotina). Bryologist 98, 189–206.CrossRefGoogle Scholar
Cornejo, C, Nelson, PR, Stepanchikova, I, Himelbrant, D, Jørgensen, PM and Scheidegger, C (2016) Contrasting pattern of photobiont diversity in the Atlantic and Pacific populations of Erioderma pedicellatum (Pannariaceae). Lichenologist 48, 275–291.CrossRefGoogle Scholar
Culberson, CF and Ammann, K (1979) Standardmethode zur Dünnschichtchromatographie von Flechtensubstanzen. Herzogia 5, 1–24.Google Scholar
Culberson, CF and Johnson, A (1982) Substitution of methyl tert-butyl ether for diethyl ether in the standardized thin-layer chromatographic method for lichen products. Journal of Chromatography 128, 253–259.CrossRefGoogle Scholar
Henssen, A (1981) The lecanoralean centrum. In Reynolds, DR (ed.), Ascomycete Systematics. The Luttrellian Concept. New York, Heidelberg & Berlin: Springer-Verlag, pp. 138–232.CrossRefGoogle Scholar
Holtan-Hartwig, J (1993) The lichen genus Peltigera, exclusive of the P. canina group, in Norway. Sommerfeltia 15, 1–77.Google Scholar
Honegger, R (1978) The ascus apex in lichenized fungi I. The Lecanora-, Peltigera- and Teloschistes-types. Lichenologist 10, 47–67.CrossRefGoogle Scholar
Katoh, K and Toh, H (2010) Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 26, 1899–1900.CrossRefGoogle ScholarPubMed
Lanfaer, R, Frandsen, PB, Wright, AM, Senfeld, T and Calcott, B (2017) PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34, 772–773.Google Scholar
Lücking, R, Lawrey, JD, Sikaroodi, M, Gillevet, PM, Chaves, JL, Sipman, HJ and Bungartz, F (2009) Do lichens domesticate photobionts like farmers domesticate crops? Evidence from a previously unrecognized lineage of filamentous cyanobacteria. American Journal of Botany 96, 1409–1418.CrossRefGoogle ScholarPubMed
Lücking, R, Hodkinson, BP and Leavitt, SD (2016) The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – approaching one thousand genera. Bryologist 119, 361–416.CrossRefGoogle Scholar
Lutzoni, F, Wagner, P, Reeb, V and Zoller, S (2000) Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Systematic Biology 49, 628–651.CrossRefGoogle ScholarPubMed
Maddison, WP and Maddison, DR (2015) Mesquite: a modular system for evolutionary analysis, version 3.11. [WWW resource] URL https://www.mesquiteproject.org/. [Accessed 5 June 2020].Google Scholar
Magain, N, Miadlikowska, J, Goffinet, B, Sérusiaux, E and Lutzoni, F (2017 a) Macroevolution of specificity in cyanolichens of the genus Peltigera section Polydactylon (Lecanoromycetes, Ascomycota). Systematic Biology 66, 74–99.Google Scholar
Magain, N, Miadlikowska, J, Mueller, O, Gajdeczka, M, Truong, C, Salamov, A, Dubchak, I, Grigoriev, IV, Goffinet, B, Sérusiaux, E, et al. (2017 b) Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: a case study using the lichen-forming genus Peltigera section Polydactylon. Molecular Phylogenetics and Evolution 117, 10–29.CrossRefGoogle ScholarPubMed
Magain, N, Truong, C, Goward, T, Niu, D, Goffinet, B, Sérusiaux, E, Vitikainen, O, Lutzoni, F and Miadlikowska, J (2018) Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in Peltigera section Peltigera (lichenized Ascomycota: Lecanoromycetes). Taxon 67, 836–870.CrossRefGoogle Scholar
McCune, B and Geiser, L (2009) Macrolichens of the Pacific Northwest. 2nd Edition. Corvallis: Oregon State University Press.Google Scholar
McCune, B and Stone, D (2020) Gregorella, a cyanobacterial pioneer on soil, new to North America. Evansia 37, 15–19.CrossRefGoogle Scholar
McCune, B, Rosentreter, R and DeBolt, A (1997) Biogeography of rare lichens from the coast of Oregon. In Kaye, TN, Liston, A, Love, RM, Luoma, DL, Meinke, RI and Wilson, MV (eds), Conservation and Management of Native Plants and Fungi. Corvallis: Native Plant Society of Oregon, pp. 234–241.Google Scholar
McCune, B, DiMeglio, E, Tønsberg, T and Yahr, R (2019) Five new crustose Stereocaulon species in western North America. Bryologist 122, 197–218.CrossRefGoogle Scholar
Miadlikowska, J and Lutzoni, F (2000) Phylogenetic revision of the genus Peltigera (lichen-forming ascomycetes) based on morphological, chemical and large subunit nuclear ribosomal DNA data. International Journal of Plant Sciences 161, 925–958.CrossRefGoogle Scholar
Miadlikowska, J and Lutzoni, F (2004) Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits. American Journal of Botany 91, 449–464.CrossRefGoogle ScholarPubMed
Miadlikowska, J, Kauff, F, Hofstetter, V, Fraker, E, Grube, M, Hafellner, J, Reeb, V, Hodkinson, BP, Kukwa, M, Lücking, R, et al. (2006) New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes. Mycologia 98, 1088–1103.CrossRefGoogle ScholarPubMed
Miadlikowska, J, Kauff, F, Högnabba, F, Oliver, JC, Molnár, K, Fraker, E, Gaya, E, Hafellner, J, Hofstetter, V, Gueidan, C, et al. (2014 a) Multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 312 genera and 66 families. Molecular Phylogenetics and Evolution 79, 132–168.CrossRefGoogle Scholar
Miadlikowska, J, Richardson, D, Magain, N, Ball, B, Anderson, F, Cameron, R, Lendemer, J, Truong, C and Lutzoni, F (2014 b) Phylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes). American Journal of Botany 101, 1141–1156.CrossRefGoogle Scholar
Miller, MA, Pfeiffer, W and Schwartz, T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans, Louisiana, pp. 1–8.Google Scholar
Miller, MA, Schwartz, T, Pickett, BE, He, S, Klem, EB, Scheuermann, RH, Passarotti, M, Kaufman, S and O'Leary, MA (2015) A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway. Evolutionary Bioinformatics 11, 43–48.CrossRefGoogle ScholarPubMed
Muggia, L, Nelson, P, Wheeler, T, Yakovchenko, LS, Tønsberg, T and Spribille, T (2011) Convergent evolution of a symbiotic duet: the case of the lichen genus Polychidium (Peltigerales, Ascomycota). American Journal of Botany 98, 1647–1656.CrossRefGoogle Scholar
O'Brien, H, Miadlikowska, J and Lutzoni, F (2005) Assessing host specialization in symbiotic cyanobacteria associated with four closely related species of the lichen fungus Peltigera. European Journal of Phycology 40, 363–378.CrossRefGoogle Scholar
Otálora, MAG, Martínez, I, O'Brien, H, Molina, MC, Aragón, G and Lutzoni, F (2010) Multiple origins of high reciprocal symbiotic specificity at an intercontinental spatial scale among gelatinous lichens (Collemataceae, Lecanoromycetes). Molecular Phylogenetics and Evolution 56, 1089–1095.CrossRefGoogle Scholar
Pardo-De la Hoz, CJ, Magain, N, Lutzoni, F, Goward, T, Restrepo, S and Miadlikowska, J (2018) Contrasting symbiotic patterns in two closely related lineages of trimembered lichens of the genus Peltigera. Frontiers in Microbiology 9, 2770.CrossRefGoogle ScholarPubMed
Rodríguez, F, Oliver, JL, Marin, A and Medina, JR (1990) The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142, 485–501.CrossRefGoogle ScholarPubMed
Spribille, T and Muggia, L (2012 [2013]) Expanded taxon sampling disentangles evolutionary relationships and reveals a new family in Peltigerales (Lecanoromycetidae, Ascomycota). Fungal Diversity 58, 171–184.CrossRefGoogle Scholar
Spribille, T, Tønsberg, T, Stabentheiner, E and Muggia, L (2014) Reassessing evolutionary relationships in the filamentous cyanolichen genus Spilonema (Peltigerales, Lecanoromycetes). Lichenologist 46, 373–388.CrossRefGoogle Scholar
Stamatakis, A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688–2690.CrossRefGoogle ScholarPubMed
Stamatakis, A, Hoover, P and Rougemont, J (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57, 758–771.CrossRefGoogle ScholarPubMed
Vilgalys, R and Hester, M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172, 4238–4246.CrossRefGoogle ScholarPubMed
Supplementary material: File

Stone et al. supplementary material

Table S1

Download Stone et al. supplementary material(File)
File 16.5 KB
Supplementary material: File

Stone et al. supplementary material

Table S2

Download Stone et al. supplementary material(File)
File 26.1 KB
Supplementary material: PDF

Stone et al. supplementary material

Figure S1

Download Stone et al. supplementary material(PDF)
PDF 1.3 MB
Supplementary material: PDF

Stone et al. supplementary material

Figure S2

Download Stone et al. supplementary material(PDF)
PDF 3.5 MB