Much of analytical TEM is based on elemental analysis of core-shell ionizations and their role in electron energy-loss spectroscopy (EELS) and energy-dispersive X-ray spectroscopy (EDS). In these techniques, integrals of the primary or secondary ionization signals (typically over many tens of eV in energy) are used to measure and map the elemental composition of probed sample areas.

In contrast, present-day STEM EELS systems are able to reveal spectral details with resolution in the range 0.1-1.0 eV. This means that EELS provides access to electronic structure and response information that goes beyond the simple elemental composition information of the integrated core-loss signals.