Hostname: page-component-7479d7b7d-jwnkl Total loading time: 0 Render date: 2024-07-10T00:06:38.011Z Has data issue: false hasContentIssue false
  • English
  • Français

Genetic and genomic resources of lentil: status, use and prospects

Published online by Cambridge University Press:  10 December 2010

Abebe Tullu ,
Axel Diederichsen ,
Galina Suvorova  and
Albert Vandenberg
Abebe Tullu
Affiliation:
Crop Development Centre, University of Saskatchewan, 51 Campus Drive, Saskatoon, Saskatchewan, CanadaS7N 5A8
Axel Diederichsen
Affiliation:
NordGen – Nordic Genetic Resource Center, Smedjevägen 3, Box 41, SE-230 53Alnarp, Sweden
Galina Suvorova
Affiliation:
Genetics and Biotechnology Lab, The All-Russian Research Institute of Grain Legumes and Groat Crops, P/b Streletskoye, Orel302502, Russia
Albert Vandenberg*
Affiliation:
Crop Development Centre, University of Saskatchewan, 51 Campus Drive, Saskatoon, Saskatchewan, CanadaS7N 5A8
*
*Corresponding author. E-mail: bert.vandenberg@usask.ca
Get access Rights & Permissions [Opens in a new window]

Abstract

Extensive collections of lentil germplasm now exist in various genebanks around the world. This germplasm including wild Lens species has been used in plant introduction strategies and in efforts to widen the potential sources of increasing genetic diversity in the breeding programmes of lentil. Improved techniques are emerging to overcome hybridization barriers between species and as a result, interspecific hybrids have been successfully obtained between species. Several interspecific recombinant inbred line populations have been developed. Selected and backcrossed lentil lines are currently in advanced yield trial stages, and desirable traits such as yield, disease resistance and agronomic traits have been incorporated into cultivated lentil especially from Lens ervoides, generating a wider spectrum of variability. Secondly, further expansion of the overall pool of germplasm and examination of allelic variation at the nucleotide level will benefit lentil-breeding programmes by augmenting phenotype-based variation to further advance cultivar development. Genomic resources for lentil are limited now, but this situation is changing rapidly as the cost of genotyping has declined. As a result, two successive expressed sequence tags (EST) projects were undertaken under the NAPGEN EST project initiative (http://www.nrc-cnrc.gc.ca/eng/programs/pbi/plant-products/napgen/.htm) and an Agricultural Development Fund project initiative. We emphasize that creation of intraspecific and interspecific genetic populations, genetic maps, association maps, quantitative trait loci and marker-assisted selection technologies for implementation in the breeding programme will enhance deployment of genes responsible for traits of interest. The economical use of genomic technologies for use in germplasm resource management and genetic improvement is on the near horizon.

Keywords

lentilsgermplasm collectionsimprovementinterspecific hybridization
Type
Research Article
Information
Plant Genetic Resources , Volume 9 , Issue 1 , April 2011 , pp. 19 - 29
Copyright
Copyright © NIAB 2010

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Ahmad, M, Russell, AC and McNeil, DL (1997) Identification and genetic characterization of different resistance sources to ascochyta blight within the genus Lens. Euphytica 97: 311–315.CrossRefGoogle Scholar
Alefeld, F (1866) Landwirthschaftliche Flora. Berlin: Wiegandt & Hempel.Google Scholar
Ali, A, Keatinge, JDH, Roider Khan, B and Ahmad, S (1991) Germplasm evaluation of dual-season lentil (Lens culinaris) lines for the arid highlands of west Asia. The Journal of Agricultural Science 117: 347–353.CrossRefGoogle Scholar
Atikyilmaz, N (2010) Grain legumes genetic resources activities in Turkey. ECPGR Working Group on Grain Legumes, fourth meeting, 16–17 November 2007, Lisbon. Available at http://www.ecpgr.cgiar.org/workgroups/grain_legumes/CReps/Turkey_report.pdf.Google Scholar
Barbazuk, WB, Emrich, SJ, Chen, HD, Li, L and Schnable, PS (2007) SNP discovery via 454 transcriptome sequencing. The Plant Journal 51: 910–918.CrossRefGoogle ScholarPubMed
Barulina, EI (1930) Lentils of the USSR and other countries. Bulletin of Applied Botany, Genetics and Plant Breeding 40: 265–304.Google Scholar
Bayaa, B, Erskine, W and Hamdi, A (1994) Response of wild lentil to Ascochyta fabae f. sp. lentis from Syria. Genetic Resources and Crop Evolution 41: 61–65.CrossRefGoogle Scholar
Bayaa, B, Erskine, W and Hamdi, A (1995) Evaluation of wild lentil collection for resistance to vascular wilt. Genetic Resources and Crop Evolution 42: 231–235.CrossRefGoogle Scholar
Brown, AHD (1989) Core collections: a practical approach to genetic resources management. Genome 31: 818–824.CrossRefGoogle Scholar
Buchwaldt, L, Anderson, KL, Morrall, RAA, Gossen, BD and Bernier, CC (2004) Identification of lentil germplasm resistant to Colletotrichum truncatum and characterization of two pathogen races. Phytopathology 94: 236–243.CrossRefGoogle Scholar
Cohen, D, Ladizinsky, G, Ziv, M and Muehlbauer, FJ (1984) Rescue of interspecific hybrids by means of embryo culture. Plant Cell, Tissue and Organ Culture 3: 343–347.CrossRefGoogle Scholar
Cubero, JI, Perez de la Vega, M and Fratini, R (2009) Origin, phylogeny, domestication and spread. In: Erskine, W, Muehlbauer, FJ, Sarker, A and Sharma, B (eds) The Lentil: Botany, Production and Uses. Wallingford: CABI, pp. 13–33.CrossRefGoogle Scholar
Erskine, W and Muehlbauer, FJ (1991) Allozyme and morphological variability, outcrossing rate and core collection formation in lentil germplasm. Theoretical and Applied Genetics 83: 119–125.CrossRefGoogle ScholarPubMed
Erskine, W, Chandra, S, Chaudhary, M, Malik, IA, Sarker, A, Sharma, B, Tufail, M and Tyagi, MC (1998) A bottleneck in lentil: widening its genetic base in South Asia. Euphytica 101: 207–211.CrossRefGoogle Scholar
FAO (2009) FAOSTAT. Available at http://faostat.fao.org/default.aspx.Google Scholar
FAO (2010) World information and early warning system (WIEWS) on plant genetic resources for food and agriculture of the Food and Agricultural Organization. Available at http://apps3.fao.org/wiews/wiews.jsp.Google Scholar
Ferguson, ME, Maxted, N, van Slageren, M and Robertson, LD (2000) A re-assessment of the taxonomy of Lens Mill. (Leguminosae, Papilionoideae, Vicieae). Botanical Journal of the Linnean Society 133: 41–59.CrossRefGoogle Scholar
Fernández-Aparicio, M, Sillero, JC and Rubiales, D (2009) Resistance to broomrape in wild lentils (Lens spp.). Plant Breeding 128: 266–270.CrossRefGoogle Scholar
Fiala, JV (2006) Transferring resistance to Colletotrichum truncatum from wild lentil species to cultivated lentil species (Lens culinaris subspp. culinaris). MSc Thesis, University of Saskatchewan.Google Scholar
Fiala, JV, Tullu, A, Banniza, S, Séguin-Swartz, G and Vandenberg, A (2009) Interspecies transfer of resistance to anthracnose in lentil (Lens culinaris Medic.). Crop Science 49: 825–830.CrossRefGoogle Scholar
Fikiru, E, Tesfaye, K and Bekele, E (2007) Genetic diversity and population structure of Ethiopian lentil (Lens culinaris Medikus) landraces as revealed by ISSR marker. African Journal of Biotechnology 6: 1460–1468.Google Scholar
Fratini, R, Ruiz, ML and Pérez de la Vega, M (2003) Intraspecific and interspecific crossing in lentil (Lens culinaris Medik.). Canadian Journal of Plant Science 84: 981–986.CrossRefGoogle Scholar
Fulton, TM, Van der Hoeven, R, Eannetta, NT and Tanksley, D (2002) Identification, analysis and utilization of conserved ortholog set of markers for competitive genomics in higher plants. The Plant Cell 14: 1457–1467.CrossRefGoogle Scholar
Furman, B (2006) Methodology to establish a composite collection: case study in lentil. Plant Genetic Resources: Characterization and Utilization 4: 2–12.CrossRefGoogle Scholar
Furman, B, Coyne, C, Redden, B, Sharma, SK and Vishnyakova, M (2009) Genetic resources: collection, characterization, conservation and documentation. In: Erskine, W, Muehlbauer, F, Sarker, A and Sharma, B (eds) The Lentil, Botany, Production and Uses. Wallingford: CABI, pp. 64–75.CrossRefGoogle Scholar
GapAnalysis (2010) Lens genepool. Available at http://gisweb.ciat.cgiar.org/GapAnalysis/.Google Scholar
Global Crop Diversity Trust (2008) Global strategy for the ex situ conservation of lentil (Lens Miller). Available at http://www.croptrust.org/documents/web/LensStrategy_FINAL_3Dec08.pdf.Google Scholar
Gupta, D and Sharma, SK (2006) Evaluation of wild Lens taxa for agro-morphological traits fungal diseases and moisture stress in North Western Indian hills. Genetic Resources and Crop Evolution 53: 1233–1241.CrossRefGoogle Scholar
Gupta, D and Sharma, SK (2007) Widening the gene pool of cultivated lentils through introgression of alien choromatin from wild Lens subspecies. Plant Breeding 126: 58–61.CrossRefGoogle Scholar
Hamdi, A and Erskine, W (1996) Reaction of wild species of the genus Lens to drought. Euphytica 91: 173–179.CrossRefGoogle Scholar
Hamwieh, A, Udupa, SM, Choumane, W, Sarker, A, Dreyer, F, Jung, C and Baum, M (2005) A genetic linkage map of Lens sp. based on microsatellite and AFLP markers and the localization of fusarium vascular wilt resistance. Theoretocal and Applied Genetics 110: 669–677.CrossRefGoogle ScholarPubMed
Horneburg, B and Becker, H (2008) Crop adaptation in on-farm management by natural and conscious selection: a case study with lentil. Crop Science 48: 203–212.CrossRefGoogle Scholar
IBPGR and ICARDA (1985) Lentil Descriptors. Rome: IBPGR.Google Scholar
Kota, R, Rudd, S, Facius, A, Kolesov, G, Thiel, T, Zhang, H, Stein, N, Mayer, K and Graner, A (2003) Snipping polymorphism from large EST collections in barley (Hordeum vulgare L.). Molecular Genetics and Genomics 270: 24–33.CrossRefGoogle ScholarPubMed
Kurlovich, BS, Rep'ev, SI, Petrove, MV, Buratseva, TV, Kartuzova, LT and Voluzneva, TA (2000) The significance of Vavilov's scientific expeditions and ideas for development and use of legume genetic resources. Plant Genetic Resources Newsletter 124: 23–32.Google Scholar
Ladizinsky, G, Braun, D, Goshen, D and Muehlbauer, FJ (1984) The biological species of the genus Lens L. Botanical Gazette 145: 253–261.CrossRefGoogle Scholar
Liu, J, Guan, JP, Xu, DX, Zhang, XY, Gu, J and Zong, XX (2008) Genetic diversity and population structure in lentil (Lens culinaris Medik.) germplasm detected by SSR markers. Acta Agronomica Sinica 34: 1901–1909.CrossRefGoogle Scholar
Moose, SP and Mumm, RF (2008) Molecular plant breeding as the foundation for 21st century crop improvement. Plant Physiology 147: 969–977.CrossRefGoogle ScholarPubMed
Muehlbauer, FJ, Seungho, C, Sarker, A, McPhee, K, Coyne, C, Rajesh, PN and Ford, R (2006) Application of biotechnology in breeding lentil for resistance to biotic and abiotic stress. Euphytica 147: 149–165.CrossRefGoogle Scholar
NordGen (2010) Portal of the Svalbard Global Seed Vault. Available at http://www.nordgen.org/sgsv/.Google Scholar
Phan, HTT, Ellwood, SR, Hane, JK, Ford, R, Materne, M and Oliver, RP (2007) Extensive macrosynteny between Medicago truncatula and Lens culinaris ssp. culinaris. Theoretical and Applied Genetics 114: 549–558.CrossRefGoogle ScholarPubMed
Picoult-Newberg, L, Ideker, TE, Pohl, MG, Taylor, SL, Donaldson, MA, Nickerson, DA and Boyce-Jacino, M (1999) Mining SNPs from EST databases. Genome Research 9: 167–174.CrossRefGoogle ScholarPubMed
Piergiovanni, AR (2000) The evolution of lentil (Lens culinaris Medik.) cultivation in Italy and its effects on the survival of autochtonous populations. Genetic Resources and Crop Evolution 47: 305–314.CrossRefGoogle Scholar
Ponting, RC, Drayton, MC, Cogan, NOI, Dobrowolski, MP, Spangenberg, GC, Smith, KF and Forster, JW (2007) SNP discovery validation haplotype structure in full length herbage nutritive quality genes of perennial ryegrass (Lolium perenne L.). Molecular Genetics and Genomics 278: 585–597.CrossRefGoogle ScholarPubMed
Rafalski, JA (2002) Applications of single nucleotide polymorphisms in crop genetics. Current Opinions in Plant Biology 5: 94–100.CrossRefGoogle ScholarPubMed
Redden, B, Maxted, N and Furman, B (2007) Chapter 2, Lens Biodiversity. In: Yadav, SS, McNeil, D and Stevenson, PC (eds) Lentil: An Ancient Crop for Modern Times. Dordrecht: Springer, pp. 11–22.CrossRefGoogle Scholar
Richards, K (2007) Appendix I. Climate change scenarios in Canada and the role of plant genetic resources. In: Veteläinen, M, Helgadóttir, A and Weibull, J (eds) Climatic Change and Genetic Resources in Northern Europe, Report of a Workshop, 18–19 September 2006, Rovaniem. Rome: Bioversity International, pp. 20–31.Google Scholar
Rostoks, N, Borevitz, JO, Hedley, PE, Russell, J, Mudie, S, Morris, J, Cardle, L, Marshall, DF and Waugh, R (2005) Single-feature polymorphism discovery in the barley transcriptome. Genome Biology 6: R54.CrossRefGoogle ScholarPubMed
Rudd, S, Schoof, H and Klaus, M (2005) Plant markers – a database of predicted molecular markers from plants. Nucleic Acids Research 33: D628–D632.CrossRefGoogle ScholarPubMed
Sarker, A, Bayaa, B and Erskine, W (2001) Registration of six lentil germplasm lines with resistance to vascular wilt. Crop Science 41: 1655.CrossRefGoogle Scholar
Simon, C and Hannan, R (1995) Development and use of core subsets of cool-season food legume germplasm collections. HortScience 30: 907.CrossRefGoogle Scholar
Slinkard, AE and Vandenberg, A (1995) Lentil. In: Slinkard, AE and Knott, DR (eds) Harvest of Gold, the History of Field Crop Breeding in Canada. Saskatoon: University Extension Press, University of Saskatchewan, pp. 191–196.Google Scholar
Stein, LD, Mungall, C, Shu, S, Caudy, M, Mangone, M, Day, A, Nickerson, E, Stajich, JE, Harris, TW, Arva, A and Lewis, S (2002) The generic genome browser: a building block for a model organism system database. Genome Research 12: 1599–1610.CrossRefGoogle Scholar
Street, K, Rukhkyan, N and Ismail, A (2008) Regeneration guidelines: lentil. In: Dulloo, ME, Thormann, I, Jorge, MA and Hanson, J (eds) Crop Specific Regeneration Guidelines [CDROM]. Rome: CGIAR System-wide Genetic Resource Programme, 10 pp.Google Scholar
Sultana, T and Ghafoor, A (2008) Genetic diversity in ex-situ conserved Lens culinaris for botanical descriptors, biochemical and molecular markers and identification of landraces from indigenous genetic resources of Pakistan. Journal of Integrative Plant Biology 50: 484–490.CrossRefGoogle ScholarPubMed
Tanksley, SD and McCouch, SR (1997) Seed banks and molecular maps: unlocking the genetic potential from the wild. Science 227: 1063–1066.CrossRefGoogle Scholar
Tullu, A, Kusmenoglu, I, McPhee, KE and Muehlbauer, FJ (2001) Characterization of core collection of lentil germplasm for phenology, morphology, seed and straw yield. Genetic Resources and Crop Evolution 48: 143–152.CrossRefGoogle Scholar
Tullu, A, Buchwaldt, L, Lulsdorf, M, Banniza, B, Barlow, B, Slinkard, A, Sarker, A, Tar'an, B, Warkentin, T and Vandenberg, A (2006) Sources of resistance to anthracnose (Colletotrichum truncatum) in wild Lens species. Genetic Resources and Crop Evolution 53: 111–119.CrossRefGoogle Scholar
Tullu, A, Banniza, B, Tar'an, B, Warkentin, T and Vandenberg, A (2010) Sources of resistance to ascochyta blight in wild species of lentil (Lens culinaris Medik.). Genetic Resources and Crop Evolution 57: 1053–1063.CrossRefGoogle Scholar
Upadhyaya, HD, Gowda, CLL and Reddy, KN (2007) Indigenous food legumes of Asia: germplasm conservation, diversity and utilization in crop improvement. In: Chadha, ML, Kuo, G and Gowda, CLL (eds) 1st International Conference on Indigenous Vegetables and Legumes: Prospectus for Fighting Poverty, Hunger and Malnutrition. Acta Horticulturae 752: 61–68.Google Scholar
Vail, SL (2010) Interspecific-derived and juvenile resistance to anthracnose in lentil. PhD Thesis, University of Saskatchewan.Google Scholar
Vail, SJ, Bett, K, Cook, DR and Vandenberg, A (2010) Mapping the lentil genome – out of the starting gate. Pulse Days 2010 Abstracts. Saskatoon: Saskatchewan Pulse Growers, 45 pp.Google Scholar
Vandenberg, A (2009) Lentil expansion in Canada. In: Ali, M and Kumar, S (eds) Milestones in Legume Research. Kanpur: Indian Institute of Pulses Research, pp. 58–72.Google Scholar
Varshney, RK, Graner, A and Sorrells, ME (2005) Genomics assisted breeding for the crop improvement. Trends in Plant Science 12: 621–630.CrossRefGoogle Scholar
Vijayan, P, Vandenberg, A and Bett, KE (2009) A mixed genotype lentil EST library representing normalized transcriptome of different seed development stages. Available at http://www.ncbi.nlm.nih.gov/nucest/?term=lentil.Google Scholar
Vishnyakova, MA (2006) Elena Ivanovna Barulina – učenica, soratnica, žena Nikolaja Ivanoviča Vavilova. Sel'skochozjajstvennaja biologija 5: 108–123.Google Scholar