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Conformational changes in the activation loop of the insulin receptor's kinase domain

Published online by Cambridge University Press:  01 October 1999

MARK FRANKEL
Affiliation:
Department of Biochemistry and Molecular Biology, Mount Sinai School of Medicine, New York, New York 10029
STEVEN M. BISHOP
Affiliation:
Department of Biochemistry and Molecular Biology, Mount Sinai School of Medicine, New York, New York 10029 Present address: Genentech Inc., Department of Pharmaceutical R & D, South San Francisco, California 94080.
ARARAT J. ABLOOGLU
Affiliation:
Department of Biochemistry and Molecular Biology, Mount Sinai School of Medicine, New York, New York 10029
YUAN-PING HAN
Affiliation:
Department of Biochemistry and Molecular Biology, Mount Sinai School of Medicine, New York, New York 10029 Present address: Department of Pediatrics, USC School of Medicine, Children's Hospital, Los Angeles, California 90027.
RONALD A. KOHANSKI
Affiliation:
Department of Biochemistry and Molecular Biology, Mount Sinai School of Medicine, New York, New York 10029
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Abstract

Low catalytic efficiency of basal-state protein kinases often depends on activation loop residues blocking substrate access to the catalytic cleft. Using the recombinant soluble form of the insulin receptor's kinase domain (IRKD) in its unphosphorylated state, activation loop conformation was analyzed by limited proteolysis. The rate of activation loop cleavage by trypsin is slow in the apo-IRKD. Bound Mg-adenine nucleoside di- and triphosphates increased the cleavage rate with half-maximal effects observed at 0.4–0.9 mM nucleotide. Adenosine monophosphate at concentrations up to 10 mM was not bound appreciably by the IRKD and had virtually no impact on activation loop cleavage. Amino-terminal and carboxy-terminal core-flanking regions of the IRKD had no statistically significant impact on the ligand-dependent or -independent activation loop cleavages. Furthermore, the core-flanking regions did not change the inherent conformational stability of the active site or the global stability of the IRKD, as determined by guanidinium chloride-induced denaturation. These measurements indicate that the intrasterically inhibitory conformation encompasses ≥90% of the ligand-free basal state kinase. However, normal intracellular concentrations of Mg-adenine nucleotides, which are in the millimolar range, would favor a basal-state conformation of the activation loop that is more accessible.

Type
Research Article
Copyright
© 1999 The Protein Society

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