Hostname: page-component-5c6d5d7d68-thh2z Total loading time: 0 Render date: 2024-08-15T22:59:12.553Z Has data issue: false hasContentIssue false

Actin surface structure revealed by antibody imprints: Evaluation of phage-display analysis of anti-actin antibodies

Published online by Cambridge University Press:  01 April 1999

ALGIRDAS J. JESAITIS
Affiliation:
Department of Microbiology, Montana State University, Bozeman, Montana 59717-3520
DAWIT GIZACHEW
Affiliation:
Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717-3520
EDWARD A. DRATZ
Affiliation:
Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717-3520
DANIEL W. SIEMSEN
Affiliation:
Department of Microbiology, Montana State University, Bozeman, Montana 59717-3520
KIM CLAWSON STONE
Affiliation:
Department of Microbiology, Montana State University, Bozeman, Montana 59717-3520
JAMES B. BURRITT
Affiliation:
Department of Microbiology, Montana State University, Bozeman, Montana 59717-3520
Get access

Abstract

Phage-display peptide library analysis of an anti-F actin polyclonal antibody identified 12 amino acid residues of actin that appear, in its X-ray crystal structure, to be grouped together in a surface accessible conformational epitope. Phage epitope mapping was carried out by isolating immune complexes containing members of the J404 nonapeptide phage-display library formed in diluted antiserum and isolated on a protein A affinity matrix. Immunoreactive clones were grown as plaques, replica plated onto nitrocellulose, and labeled with anti-actin immune serum. One hundred and forty-four positively staining clones identified in this way were sequenced. Of these, 54 displayed peptides with sequence similarities. When the most abundantly selected sequence, KQTWQQLWD, was produced as a synthetic peptide and derivatized to ovalbumin, the complex was strongly recognized by the antiserum on Western blots and inhibited the binding of the antibody to immobilized F-actin by 60%. A scrambled version of this sequence WQDKWLQTQ, when coupled to ovalbumin, was not recognized by the antiserum and minimally inhibited binding of antiserum to immobilized F-actin by 10%. KQTWQQLWD contained four residues that corresponded, in frame, to a highly conserved six residue region of the chicken β-actin sequence 351TFQQMW356 (identical residues are shown in bold). Examination of the rabbit skeletal muscle X-ray crystal structure suggested that within a 15 Å radius of W356, nine additional residues were arranged on the actin surface in such a way that they could be mimicked by several of the selected phage sequences with root-mean-square deviation fits of 2.1–2.5 Å. We conclude that phage-display analysis can provide information about the relative location of amino acids on the surfaces of proteins using antibody imprints of the protein surface structure.

Type
Research Article
Copyright
© 1999 The Protein Society

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)