Breeding and genetics
Integrating genomic selection into dairy cattle breeding programmes: a review
- A. Bouquet, J. Juga
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- Published online by Cambridge University Press:
- 03 December 2012, pp. 705-713
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Extensive genetic progress has been achieved in dairy cattle populations on many traits of economic importance because of efficient breeding programmes. Success of these programmes has relied on progeny testing of the best young males to accurately assess their genetic merit and hence their potential for breeding. Over the last few years, the integration of dense genomic information into statistical tools used to make selection decisions, commonly referred to as genomic selection, has enabled gains in predicting accuracy of breeding values for young animals without own performance. The possibility to select animals at an early stage allows defining new breeding strategies aimed at boosting genetic progress while reducing costs. The first objective of this article was to review methods used to model and optimize breeding schemes integrating genomic selection and to discuss their relative advantages and limitations. The second objective was to summarize the main results and perspectives on the use of genomic selection in practical breeding schemes, on the basis of the example of dairy cattle populations. Two main designs of breeding programmes integrating genomic selection were studied in dairy cattle. Genomic selection can be used either for pre-selecting males to be progeny tested or for selecting males to be used as active sires in the population. The first option produces moderate genetic gains without changing the structure of breeding programmes. The second option leads to large genetic gains, up to double those of conventional schemes because of a major reduction in the mean generation interval, but it requires greater changes in breeding programme structure. The literature suggests that genomic selection becomes more attractive when it is coupled with embryo transfer technologies to further increase selection intensity on the dam-to-sire pathway. The use of genomic information also offers new opportunities to improve preservation of genetic variation. However, recent simulation studies have shown that putting constraints on genomic inbreeding rates for defining optimal contributions of breeding animals could significantly reduce achievable genetic gain. Finally, the article summarizes the potential of genomic selection to include new traits in the breeding goal to meet societal demands regarding animal health and environmental efficiency in animal production.
A performance test for boar taint compounds in live boars
- C. Baes, S. Mattei, H. Luther, S. Ampuero, X. Sidler, G. Bee, P. Spring, A. Hofer
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- Published online by Cambridge University Press:
- 05 December 2012, pp. 714-720
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Genetically reducing boar taint using low-taint lines is considered the most sustainable and economic long-term alternative to surgical castration of male pigs. Owing to the high heritability of the main boar taint components (androstenone, skatole and indole), breeding is an excellent tool for reducing the number of tainted carcasses. To incorporate boar taint into breeding programmes, standardized performance testing is required. The objective of this study was to develop and formally present a performance test for the main boar taint compounds on live breeding candidates. First, a standardized performance test for boar taint was established. A biopsy device was developed to extract small tissue samples (200 to 300 mg) from breeding candidates. Quantification of boar taint components from these small samples using specialized chemical extraction methods proved accurate and repeatable (r = 0.938). Following establishment of the method, biopsy samples of 516 live boars (100 to 130 kg live weight) were collected in the second step. Various mixed linear models were tested for each boar taint compound; models were ranked in terms of their information content. Pedigree information of 2245 ancestors of biopsied animals was included, and genetic parameters were estimated using univariate and multivariate models. Androstenone (in μg/g liquid fat (LF): mean = 0.578, σ = 0.527), skatole (in μg/g LF: mean = 0.033, σ = 0.002) and indole (in μg/g LF: mean = 0.032, σ = 0.002) levels obtained by biopsy were plausible. Heritability estimates for androstenone calculated with univariate (0.453) and multivariate (0.452) analyses were comparable to those in the literature. Heritabilities for skatole (0.495) and indole (0.550) were higher than that for androstenone. Genetic and phenotypic correlations were similar to those published previously. Our results show that data on boar taint compounds from small adipose samples obtained by biopsy provide similar genetic parameters as that described in the literature for larger samples and are therefore a reliable performance test for boar taint in live breeding candidates.
Genetic (co)variance for sire fertility estimated by additive, non-additive and longitudinal models in Holstein–Zebu cross-bred cows
- A. Menéndez Buxadera, Y. Ayrado
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- Published online by Cambridge University Press:
- 11 December 2012, pp. 721-728
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For this study, we used the results of sire fertility (SF) measured on a monthly basis by the ratio between the number of pregnant cows and the number of inseminations, from a total of 905 140 inseminations carried out in Cuba between 1994 and 2003. These artificial inseminations were made using 815 sires in 3249 herds throughout the country, and were analysed using additive, non-additive linear models and a random regression model (RRM). The additive genetic (add), heterosis (het) and recombination loss (rec) coefficients were estimated according to the proportion of Zebu (Z) and Holstein (H) blood from the paternal and maternal origin of each cow. The mean level of SF was 48.8%, whereas het and rec were 9.6% and −8.4%, respectively. The heritability (h2) of a single insemination ranged from h2 = 0.011 to h2 = 0.030 for females from 0% to 100% of H genes. The additive multi-trait and RRM analyses showed the existence of heterogeneous genetic (co)variance components, as the proportion of Holstein genes in the inseminated cow increased. We found low genetic correlations for SF recorded in pure-bred and cross-bred females, with over 50% of breed differences in their additive genetic composition. The use of a RRM allows us to identify the changes in genetic (co)variance and estimated breeding values in the whole trajectory of the different proportions of Bos taurus × Bos indicus blood.
Comparison of different imputation methods from low- to high-density panels using Chinese Holstein cattle
- Z. Weng, Z. Zhang, Q. Zhang, W. Fu, S. He, X. Ding
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- Published online by Cambridge University Press:
- 11 December 2012, pp. 729-735
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Imputation of high-density genotypes from low- or medium-density platforms is a promising way to enhance the efficiency of whole-genome selection programs at low cost. In this study, we compared the efficiency of three widely used imputation algorithms (fastPHASE, BEAGLE and findhap) using Chinese Holstein cattle with Illumina BovineSNP50 genotypes. A total of 2108 cattle were randomly divided into a reference population and a test population to evaluate the influence of the reference population size. Three bovine chromosomes, BTA1, 16 and 28, were used to represent large, medium and small chromosome size, respectively. We simulated different scenarios by randomly masking 20%, 40%, 80% and 95% single-nucleotide polymorphisms (SNPs) on each chromosome in the test population to mimic different SNP density panels. Illumina Bovine3K and Illumina BovineLD (6909 SNPs) information was also used. We found that the three methods showed comparable accuracy when the proportion of masked SNPs was low. However, the difference became larger when more SNPs were masked. BEAGLE performed the best and was most robust with imputation accuracies >90% in almost all situations. fastPHASE was affected by the proportion of masked SNPs, especially when the masked SNP rate was high. findhap ran the fastest, whereas its accuracies were lower than those of BEAGLE but higher than those of fastPHASE. In addition, enlarging the reference population improved the imputation accuracy for BEAGLE and findhap, but did not affect fastPHASE. Considering imputation accuracy and computational requirements, BEAGLE has been found to be more reliable for imputing genotypes from low- to high-density genotyping platforms.
Nutrition
Impact of fibre intake and fibre source on digestibility, gut development, retention time and growth performance of indigenous and exotic pigs
- T. T. B. Ngoc, N. T. Len, J. E. Lindberg
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- 28 November 2012, pp. 736-745
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The impact of fibre level and fibre source on digestibility, gastrointestinal tract (GIT) development, total tract mean retention time (MRT) and growth performance was studied in indigenous Mong Cai (MC) and exotic Landrace × Yorkshire (LY) pigs. The diets were based on maize, rice bran, soyabean meal, fish meal and soyabean oil, and cassava residue (CR) or brewer's grain (BG) as fibrous ingredient sources in the high-fibre diets (HF) and were fed ad libitum. A low-fibre diet (LF), containing around 200 g NDF/kg dry matter (DM), was formulated without CR and BG as feed ingredients. The HF diets (HF-CR and HF-BG) were formulated to contain around 270 g NDF/kg DM. The experiment was arranged as a 2 × 3 factorial completely randomized design with six replications, and lasted 27 days. Increased dietary fibre level resulted in a reduction (P < 0.05) in average daily gain, digestibility of organic matter (OM), CP and gross energy (GE) at the ileum and in the total tract, and in MRT, and an increase (P < 0.05) in the feed conversion ratio and in the weight of the GIT (except for small intestine and caecum). The coefficients of total tract digestibility of fibre fractions were higher in HF diets than in the LF diet, with highest values for diet HF-CR, which had a high proportion of soluble non-starch polysaccharides. MC pigs had longer MRT of digesta than LY pigs (P < 0.05), resulting in higher digestibility at the ileum and in the total tract. Across diets and breeds, the total tract apparent digestibility of OM, CP and GE was positively related (R2 = 0.80 to 0.84) to the MRT of solids, whereas the MRT was negatively related to the DM intake (R2 = 0.60).
Growth, training response and health in Standardbred yearlings fed a forage-only diet
- S. Ringmark, L. Roepstorff, B. Essén-Gustavsson, T. Revold, A. Lindholm, U. Hedenström, M. Rundgren, G. Ögren, A. Jansson
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- 07 December 2012, pp. 746-753
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The aim of this study was to, from a holistic perspective, describe the effects of a forage-only feeding system and a conventional training program on young Standardbred horses and compare data with similar observations from the literature. Sixteen Standardbred colts fed a forage-only diet for 4 months from breaking (August to December) and with the goal to vigorously trot 5 to 7 km at a speed of 5.6 m/s (3 min/km) were studied. The horses were fed grass haylage (56 to 61% dry matter (DM), 2.80 to 3.02 Mcal DE/kg DM and 130 to 152 g CP/kg DM) ad libitum, 1 kg of a lucerne product and minerals. The amount of training and number of training sessions were documented daily, and feed intake and body development were measured once every month. Heart rate (HR) was measured during and after a standardized exercise test in October and December. In December, a postexercise venous blood sample was collected and analyzed for plasma lactate concentration. Muscle biopsies (m. gluteus medius) were taken and analyzed for glycogen and fiber composition. Health was assessed in October and November by an independent veterinarian using a standardized health scoring protocol. BW and height at withers increased from 402 to 453 kg (root mean square error (RMSE) 6) and from 148.7 to 154.1 cm (RMSE 0.7), respectively, and the body condition score was 4.9 (RMSE 0.2) at the end of the study. Muscle glycogen content was 532 mmol/kg dry weight (s.d. 56). There was a significant decrease in postexercise HR (81 v. 73 bpm, RMSE 8), and the individual amount of training was negatively correlated with HR during and after exercise. Health scores were high and similar at both assessments (8.4 and 8.4 (RMSE 1.0) out of 10; P > 0.05), and the number of lost training days per month due to health problems was <0.9, with the exception of November (5.3 days). It is concluded that yearlings in training fed high-energy forage ad libitum can reach a conventional training goal and grow at least as well as earlier observations on yearlings of other light breeds.
δ13C as a marker to study digesta passage kinetics in ruminants: a combined in vivo and in vitro study
- W. F. Pellikaan, M. W. A. Verstegen, S. Tamminga, J. Dijkstra, W. H. Hendriks
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- 05 December 2012, pp. 754-767
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The aim of the current study was to explore the use of the tracer 13C as an internal marker to assess feed fraction-specific digesta passage kinetics through the digestive tract of dairy cows. Knowledge on feed-specific fractional passage rates is essential to improve estimations on the extent of rumen degradation and microbial protein efficiency; however, this information is largely lacking. An in vivo and in vitro experiment was conducted with grass silages (Lolium perenne L.) that were enriched with 13C by growing the grass under elevated 13CO2 conditions. In a crossover design, two dairy cows received pulse doses of two 13C-enriched grass silages and chromium-mordanted neutral detergent fibre (Cr-NDF) into the rumen. The two 13C-enriched grass silages used differed in digestibility and were grown under identical field conditions as the bulk silages fed to the animals. Faecal excretion patterns of 13C-enriched dry matter (13C-DM), neutral detergent fibre (13C-NDF) and Cr-NDF were established, and a nonlinear multicompartmental model was used to determine their rumen passage kinetics. In addition, the 13C-enriched silages were incubated in rumen liquid in an in vitro batch culture system at different time intervals to determine the effect of fermentation on 13C-enrichment in the residue. The in vitro study showed that the 13C : 12C ratios in DM and NDF residues remained stable from 24 h of incubation onwards. In addition, in vitro fractional degradation rates for 12C in the DM and NDF did not differ from those of 13C, indicating that fermentative degradation does not affect the 13C : 12C ratio in the DM nor in the NDF fraction of the residue. Model fits to the faecal excretion curves showed a significant difference in fractional rumen passage rates between Cr-NDF, 13C-DM and 13C-NDF (P ⩽ 0.025). Silage type had no clear effect on rumen passage kinetics (P ⩾ 0.081). Moreover, it showed that peak enrichments for 13C-DM and 13C-NDF in faeces were reached at 30.7 and 41.7 h post dosing, respectively. This is well after the time (24 h) when the 13C : 12C ratios of the in vitro unfermented residues have reached stable enrichment level. Fractional rate constants for particle passage from the rumen are estimated from the descending slope of faecal excretion curves. The present study shows that the decline in 13C : 12C ratio after peak enrichment is not affected by fermentative degradation and therefore can be used to assess feed component-specific fractional passage rates.
Effects of replacing grass silage with maize silages differing in inclusion level and maturity on the performance, meat quality and concentrate-sparing effect of beef cattle
- T. W. J. Keady, A. W. Gordon, B. W. Moss
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- 18 December 2012, pp. 768-777
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The effects of maturity of maize at harvest, level of inclusion and potential interactions on the performance, carcass composition, meat quality and potential concentrate-sparing effect when offered to finishing beef cattle were studied. Two maize silages were ensiled that had dry matter (DM) concentrations of 217 and 304 g/kg and starch concentrations of 55 and 258 g/kg DM, respectively. Grass silage was offered as the sole forage supplemented with either 4 or 8 kg concentrate/steer daily or in addition with one of the two maize silages at a ratio 0.5 : 0.5, on a DM basis, maize silage : grass silage supplemented with 4 kg concentrate daily. The two maize silages were also offered as the sole forage supplemented with 4 kg concentrate/steer daily. The forages were offered ad libitum. The six diets were offered to 72 steers (initial live weight 522 s.d. 23.5 kg) for 146 days. There were significant interactions (P < 0.05) between maize maturity and inclusion level for food intake, fibre digestibility and daily gain. For the grass silage supplemented with 4 or 8 kg concentrate, and the maize silages with DM concentrations of 217 and 304 g/kg offered as 0.5 or 1.0 of the forage component of the diet, total DM intakes were 8.3, 9.8, 8.9, 8.2, 9.2 and 9.8 kg DM/day (s.e. 0.27); live-weight gains were 0.74, 1.17, 0.86, 0.71, 0.88 and 1.03 kg/day (s.e. 0.057); and carcass gains were 0.48, 0.73, 0.56, 0.46, 0.56 and 0.63 kg/day (s.e. 0.037), respectively. Increasing the level of concentrate (offered with grass silage), maize maturity and level of maize inclusion reduced (P < 0.05) fat b* (yellowness). The potential daily concentrate-sparing effect, as determined by carcass gain, for the maize silages with DM concentrations of 217 and 304 g/kg offered as 0.5 and 1.0 of the forage component of the diet were 1.3, −0.3, 1.3 and 2.4 kg fresh weight, respectively. It is concluded that the response, in animal performance, including maize silage is dependent on the stage of maturity and level of inclusion in the diet. Maize silage with a DM of 304 g/kg offered ad libitum increased carcass gain by 31%, because of a combination of increased metabolizable energy (ME) intake and improved efficiency of utilization of ME, and produced carcasses with whiter fat.
Physiology and functional biology of systems
Erythropoietin non-viral gene therapy does not affect motility, viability, morphology or concentration of rabbit sperm
- T. F. Collares, V. F. Campos, G. Urtiaga, P. M. M. Leon, M. G. Amaral, C. P. Hartleben, A. J. McBride, O. A. Dellagostin, J. C. Deschamps, F. K. Seixas, T. Collares
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- 22 November 2012, pp. 778-783
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Erythropoietin (EPO) gene therapy can be used for several purposes; however, its effects on reproductive performance are unknown. The aim of this study was to evaluate the toxicological effects of non-viral (EPO) gene transfer on sperm motility, viability, morphology and concentration. Rabbit EPO cDNA was cloned into a pTarget mammalian expression vector. Rabbits were administered with: (1) pTarget/EPO vector, (2) recombinant human EPO (rHuEpo) and (3) saline (control). Both pTarget/EPO and rHuEpo significantly increased (P < 0.05) hematocrit levels 1 week after injection and they remained significantly higher than the control for up to 5 weeks (P < 0.05), showing that both EPO treatments were effective in stimulating the production of red blood cells in rabbits. The EPO gene transfer or rHuEPO administration had no significant effect (P > 0.05) on sperm motility, vigor, viability, concentration or morphology in the testis.
Responses to n-3 fatty acid (LCPUFA) supplementation of gestating gilts, and lactating and weaned sows
- M. N. Smit, J. L. Patterson, S. K. Webel, J. D. Spencer, A. C. Cameron, M. K. Dyck, W. T. Dixon, G. R. Foxcroft
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- Published online by Cambridge University Press:
- 05 December 2012, pp. 784-792
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Feeding n-3 long-chain polyunsaturated fatty acids (LCPUFA) to gilts or sows has shown different responses to litter growth, pre-weaning mortality and subsequent reproductive performance of the sow. Two hypotheses were tested: (1) that feeding a marine oil-based supplement rich in protected n-3 LCPUFAs to gilts in established gestation would improve the growth performance of their litters; and (2) that continued feeding of the supplement during lactation and after weaning would offset the negative effects of lactational catabolism induced, using an established experimental model involving feed restriction of lactating primiparous sows. A total of 117 primiparous sows were pair-matched at day 60 of gestation by weight, and when possible, litter of origin, and were allocated to be either control sows (CON) fed standard gestation and lactation diets, or treated sows (LCPUFA) fed the standard diets supplemented with 84 g/day of a n-3 LCPUFA rich supplement, from day 60 of first gestation, through a 21-day lactation, and until euthanasia at day 30 of their second gestation. All sows were feed restricted during the last 7 days of lactation to induce catabolism, providing a background challenge against which to determine beneficial effects of n-3 LCPUFA supplementation on subsequent reproduction. In the absence of an effect on litter size or birth weight, n-3 LCPUFA tended to improve piglet BW gain from birth until 34 days after weaning (P = 0.06), while increasing pre-weaning mortality (P = 0.05). It did not affect energy utilization by the sow during lactation, thus not improving the catabolic state of the sows. Supplementation from weaning until day 30 of second gestation did not have an effect on embryonic weight, ovulation rate or early embryonic survival, but did increase corpora lutea (CL) weight (P = 0.001). Eicosapentaenoic acid and docosahexaenoic acid (DHA) levels were increased in sow serum and CL (P < 0.001), whereas only DHA levels increased in embryos (P < 0.01). In conclusion, feeding n-3 LCPUFA to gilts tended to improve litter growth, but did not have an effect on overall subsequent reproductive performance.
Effect of the addition of IGF-I and vitamin E to stored boar semen
- M. F. B. Mendez, M. G. Zangeronimo, L. G. P. Rocha, B. G. Faria, B. A. Pereira, C. D. Fernandes, B. R. Chaves, L. D. S. Murgas, R. V. Sousa
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- Published online by Cambridge University Press:
- 05 December 2012, pp. 793-798
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The objective of this study was to evaluate the addition of IGF-I to pig insemination doses stored at 15°C, in conjunction with the addition of different amounts of vitamin E (α-tocopherol). Semen samples (n = 12) from four boars were treated by the addition of different concentrations of vitamin E, ranging up to 400 μg/ml. Immediately after processing and after the doses had been stored at 15°C for 24 or 72 h, samples were warmed at 37°C and 30 ng/ml of IGF-I was added. The assessments were made after 10 and 120 min of IGF-I addition. There was a minor effect of the vitamin E added before cooling and IGF-I added after storage on sperm quality. The addition of 400 μg/ml of vitamin E to diluted semen reduced (P < 0.01) the malondialdehyde (MDA) production in boar semen stored at 15°C for 72 h, regardless of the addition of IGF-I as additive during a 120 min incubation period at 37°C. In these conditions, IGF-I also reduced (P < 0.05) the MDA production in semen samples without addition of vitamin E. IGF-I in the presence of vitamin E reduced (P = 0.03) the glucose intake in freshly diluted boar semen samples before cooling. It was concluded that the addition of 400 μg/ml of vitamin E reduces the MDA production in boar semen stored at 15°C for 72 h, regardless of the presence of IGF-I additive. The addition of IGF-I in doses stored for 72 h with vitamin E ensures higher sperm motility after 120 min of incubation at 37°C.
Microfluidic high-throughput RT-qPCR measurements of the immune response of primary bovine mammary epithelial cells cultured from milk to mastitis pathogens
- D. Sorg, K. Danowski, V. Korenkova, V. Rusnakova, R. Küffner, R. Zimmer, H. H. D. Meyer, H. Kliem
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- Published online by Cambridge University Press:
- 11 December 2012, pp. 799-805
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Bovine mastitis, the inflammation of the udder, is a major problem for the dairy industry and for the welfare of the animals. To better understand this disease, and to implement two special techniques for studying mammary gland immunity in vitro, we measured the innate immune response of primary bovine mammary epithelial cells (pbMEC) from six Brown Swiss cows after stimulation with the heat-inactivated mastitis pathogens, Escherichia coli 1303 and Staphylococcus aureus 1027. The cells were extracted and cultivated from milk instead of udder tissue, which is usually done. The advantages of this technique are non-invasiveness and less contamination by fibroblasts. For the first time, pbMEC gene expression (GE) was measured with a microfluidic high-throughput real-time reverse transcription-quantitative PCR platform, the BioMark HD™ system from Fluidigm. In addition to the physiological analysis, the precision and suitability of this method was evaluated in a large data set. The mean coefficient of variance (± s.e.) between repeated chips was 4.3 ± 0.4% for highly expressed and 3.3 ± 0.4% for lowly expressed genes. Quantitative PCR (qPCR) replicate deviations were smaller than the cell culture replicate deviations, indicating that biological and cell culture differences could be distinguished from the background noise. Twenty-two genes (complement system, chemokines, inflammatory cytokines, antimicrobial peptides, acute phase response and toll-like receptor signalling) were differentially expressed (P < 0.05) with E. coli. The most upregulated gene was the acute phase protein serum amyloid A3 with 618-time fold. S. aureus slightly induced CCL5, IL10, TLR4 and S100A12 expression and failed to elicit a distinct overall innate immune response. We showed that, with this milk-derived pbMEC culture and the high-throughput qPCR technique, it is possible to obtain similar results in pbMEC expression as with conventional PCR and with satisfactory precision so that it can be applied in future GE studies in pbMEC.
Behaviour, welfare and health
Food sensory characteristics: their unconsidered roles in the feeding behaviour of domestic ruminants
- A. Favreau-Peigné, R. Baumont, C. Ginane
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- Published online by Cambridge University Press:
- 06 December 2012, pp. 806-813
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When domestic ruminants are faced with food diversity, they can use pre-ingestive information (i.e. food sensory characteristics perceived by the animal before swallowing the food) and post-ingestive information (i.e. digestive and metabolic consequences, experienced by the animal after swallowing the food) to evaluate the food and make decisions to select a suitable diet. The concept of palatability is essential to understand how pre- and post-ingestive information are interrelated. It refers to the hedonic value of the food without any immediate effect of post-ingestive consequences and environmental factors, but with the influence of individual characteristics, such as animal's genetic background, internal state and previous experiences. In the literature, the post-ingestive consequences are commonly considered as the main force that influences feeding behaviour whereas food sensory characteristics are only used as discriminatory agents. This discriminatory role is indeed important for animals to be aware of their feeding environment, and ruminants are able to use their different senses either singly or in combination to discriminate between different foods. However, numerous studies on ruminants’ feeding behaviour demonstrate that the role of food sensory characteristics has been underestimated or simplified; they could play at least two other roles. First, some sensory characteristics also possess a hedonic value which influences ruminants’ intake, preferences and food learning independently of any immediate post-ingestive consequences. Further, diversity of food sensory characteristics has a hedonic value, as animals prefer an absence of monotony in food sensory characteristics at similar post-ingestive consequences. Second, some of these food sensory characteristics become an indicator of post-ingestive consequences after their initial hedonic value has acquired a positive or a negative value via previous individual food learning or evolutionary processes. These food sensory characteristics thus represent cues that could help ruminants to anticipate the post-ingestive consequences of a food and to improve their learning efficiency, especially in complex environments. This review then suggests that food sensory characteristics could be of importance to provide pleasure to animals, to increase palatability of a food and to help them learn in complex feeding situations which could improve animal welfare and productivity.
Health parameters in tail biters and bitten pigs in a case–control study
- C. Munsterhjelm, O. Simola, L. Keeling, A. Valros, M. Heinonen
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- Published online by Cambridge University Press:
- 29 November 2012, pp. 814-821
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Health in relation to tail-biting behaviour was investigated on a problem farm. Quartets (n = 16) of age- and gender-matched fattening pigs including a tail biter (TB, n = 16), a victim (V, n = 16), a control in the same pen (Ctb, n = 10) and a control in a pen where no tail biting was observed (Cno, n = 14) were chosen by direct behavioural observation. Haematological and clinicochemical analyses, autopsy and histological examination of 16 different tissues were carried out. Tail lesion severity was evaluated both macroscopically, on the basis of inspection, and histologically, in the sagittally cut tail. Category effects were tested using Friedman's ANOVA by Ranks, Cochran's Q or a repeated-measure GLM and, if significant, pair-wise tests were conducted using Wilcoxon Signed Ranks or McNemar's Test. The number of received tail bites correlated better with histological than with macroscopic tail lesion scoring because of deep inflammation beneath healthy skin in some cases. Most individuals had mild inflammatory lesions in internal organs suggestive of generalized activation of the immune system, and 30% of the animals were anaemic, possibly because of systemic spread of infectious agents. V had more severe respiratory organ lesions and higher serum protein concentrations than all other categories of pigs. Liver- and muscle-specific enzymes (alanine aminotransferase, alkaline phosphatase and creatine kinase) differed between categories. In conclusion, most animals had signs of generalized activation of the immune system, possibly because of systemic spread of infectious agents. V pigs suffered from more severe inflammatory lesions than TB, Ctb or Cno. Deep infections may exist under healthy skin in the tail of bitten pigs.
Physiological and behavioral responses of horses during police training
- C. C. B. M. Munsters, E. K. Visser, J. van den Broek, M. M. Sloet van Oldruitenborgh-Oosterbaan
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- Published online by Cambridge University Press:
- 19 December 2012, pp. 822-827
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Mounted police horses have to cope with challenging, unpredictable situations when on duty and it is essential to gain insight into how these horses handle stress to warrant their welfare. The aim of the study was to evaluate physiological and behavioral responses of 12 (six experienced and six inexperienced) police horses during police training. Horses were evaluated during four test settings at three time points over a 7-week period: outdoor track test, street track test, indoor arena test and smoke machine test. Heart rate (HR; beats/min), HR variability (HRV; root means square of successive differences; ms), behavior score (BS; scores 0 to 5) and standard police performance score (PPS; scores 1 to 0) were obtained per test. All data were statistically evaluated using a linear mixed model (Akaike's Information criterium; t > 2.00) or logistic regression (P < 0.05). HR of horses was increased at indoor arena test (98 ± 26) and smoke machine test (107 ± 25) compared with outdoor track (80 ± 12, t = 2.83 and t = 3.91, respectively) and street track tests (81 ± 14, t = 2.48 and t = 3.52, respectively). HRV of horses at the indoor arena test (42.4 ± 50.2) was significantly lower compared with street track test (85.7 ± 94.3 and t = 2.78). BS did not show significant differences between tests and HR of horses was not always correlated with the observed moderate behavioral responses. HR, HRV, PPS and BS did not differ between repetition of tests and there were no significant differences in any of the four tests between experienced and inexperienced horses. No habituation occurred during the test weeks, and experience as a police horse does not seem to be a key factor in how these horses handle stress. All horses showed only modest behavioral responses, and HR may provide complimentary information for individual evaluation and welfare assessment of these horses. Overall, little evidence of stress was observed during these police training tests. As three of these tests (excluding the indoor arena test) reflect normal police work, it is suggested that this kind of police work is not significantly stressful for horses and will have no negative impact on the horse's welfare.
Effect of previous handling experiences on responses of dairy calves to routine husbandry procedures
- M. Stewart, H. M. Shepherd, J. R. Webster, J. R. Waas, L. M. McLeay, K. E. Schütz
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- Published online by Cambridge University Press:
- 06 December 2012, pp. 828-833
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The nature of human–animal interactions is an important factor contributing to animal welfare and productivity. Reducing stress during routine husbandry procedures is likely to improve animal welfare. We examined how the type of early handling of calves affected responses to two common husbandry procedures, ear-tagging and disbudding. Forty Holstein–Friesian calves (n = 20/treatment) were exposed to one of two handling treatments daily from 1 to 5 weeks of age: (1) positive (n = 20), involving gentle handling (soft voices, slow movements, patting), and (2) negative (n = 20), involving rough handling (rough voices, rapid movements, pushing). Heart rate (HR), respiration rate (RR) and behaviour (activity, tail flicking) were measured before and after ear-tagging and disbudding (2 days apart). Cortisol was measured at −20 (baseline), 20 and 40 min relative to disbudding time. There were no significant treatment differences in HR, RR or behaviour in response to either procedure. However, the following changes occurred across both treatment groups. HR increased after disbudding (by 14.7 ± 4.0 and 18.6 ± 3.8 bpm, positive and negative, respectively; mean ± s.e.m.) and ear-tagging (by 8.7 ± 3.1 and 10.3 ± 3.0 bpm, positive and negative, respectively). After disbudding, there was an increase in RR (by 8.2 ± 3.4 and 9.3 ± 3.4 breaths/min, positive and negative, respectively), overall activity (by 9.4 ± 1.2 and 9.9 ± 1.3 frequency/min, positive and negative, respectively) and tail flicking (by 13.2 ± 2.8 and 11.2 ± 3.0 frequency/min, positive and negative, respectively), and cortisol increased from baseline at 20 min post procedure (by 10.3 ± 1.1 and 12.3 ± 1.1 nmol/l positive and negative, respectively). Although we recorded significant changes in calf responses during ear-tagging and disbudding, the type of prior handling had no effect on responses. The effects of handling may have been overridden by the degree of pain and/or stress associated with the procedures. Further research is warranted to understand the welfare impact and interaction between previous handling and responses to husbandry procedures.
Effect of grazing on the cow welfare of dairy herds evaluated by a multidimensional welfare index
- E. Burow, T. Rousing, P. T. Thomsen, N. D. Otten, J. T. Sørensen
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- Published online by Cambridge University Press:
- 19 December 2012, pp. 834-842
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Structural development in the prime sector has led to increasing herd sizes and new barn systems, followed by less summer grazing for dairy cows in Denmark. Effects of grazing on single welfare measures in dairy cows – for example, the presence of integument alterations or mortality – have been studied under different conditions. However, the effect of grazing on welfare, conceptualised as the multidimensional physical and mental state of the animal, has not yet been studied in contemporary cubicle loose-housing systems. The aim of our study was to investigate, based on a Welfare Quality® inspired multidimensional dairy cow welfare assessment protocol, the within-herd effect of summer grazing compared with winter barn housing in Danish dairy herds with cubicle free-stall systems for the lactating cows. Our hypothesis was that cow welfare in dairy herds was better during summer grazing than during full-time winter housing. Furthermore, we expected improved welfare with an increase in daily summer grazing hours. In total, 41 herds have been visited once in the winter and once in the summer of 2010 to assess their welfare status with 17 different animal- and resource-based welfare measures. A panel of 20 experts on cattle welfare and husbandry evaluated the relative weight of the 17 welfare measures in a multidimensional assessment scheme. They estimated exact weights for a priori constituted severe compared with moderate scores of welfare impairment concerning each measure, as well as relevance of the measures in relation to each other. A welfare index (WI; possible range 0 to 5400) was calculated for each herd and season with a higher index indicating poorer welfare. The within-herd comparison of summer grazing v. winter housing considered all the 17 measures. The mean WI in summer was significantly lower (better) than in winter (mean 2926 v. 3330; paired t-test P = 0.0001) based on a better state of the integument, claw conformation and better access to water and food. Body condition and faeces consistence were worse in summer. Many daily grazing hours (range average above 3 to 9 h) turned out to be more beneficial than few daily grazing hours (range average above 9 to 21 h) for the welfare of the dairy herds. In conclusion, this study reports a positive within-herd effect of summer grazing on dairy cow welfare, where many daily grazing hours were more beneficial than few daily grazing hours.
Farming systems and environment
Future consequences and challenges for dairy cow production systems arising from climate change in Central Europe – a review
- M. Gauly, H. Bollwein, G. Breves, K. Brügemann, S. Dänicke, G. Daş, J. Demeler, H. Hansen, J. Isselstein, S. König, M. Lohölter, M. Martinsohn, U. Meyer, M. Potthoff, C. Sanker, B. Schröder, N. Wrage, B. Meibaum, G. von Samson-Himmelstjerna, H. Stinshoff, C. Wrenzycki
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- Published online by Cambridge University Press:
- 20 December 2012, pp. 843-859
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It is well documented that global warming is unequivocal. Dairy production systems are considered as important sources of greenhouse gas emissions; however, little is known about the sensitivity and vulnerability of these production systems themselves to climate warming. This review brings different aspects of dairy cow production in Central Europe into focus, with a holistic approach to emphasize potential future consequences and challenges arising from climate change. With the current understanding of the effects of climate change, it is expected that yield of forage per hectare will be influenced positively, whereas quality will mainly depend on water availability and soil characteristics. Thus, the botanical composition of future grassland should include species that are able to withstand the changing conditions (e.g. lucerne and bird's foot trefoil). Changes in nutrient concentration of forage plants, elevated heat loads and altered feeding patterns of animals may influence rumen physiology. Several promising nutritional strategies are available to lower potential negative impacts of climate change on dairy cow nutrition and performance. Adjustment of feeding and drinking regimes, diet composition and additive supplementation can contribute to the maintenance of adequate dairy cow nutrition and performance. Provision of adequate shade and cooling will reduce the direct effects of heat stress. As estimated genetic parameters are promising, heat stress tolerance as a functional trait may be included into breeding programmes. Indirect effects of global warming on the health and welfare of animals seem to be more complicated and thus are less predictable. As the epidemiology of certain gastrointestinal nematodes and liver fluke is favourably influenced by increased temperature and humidity, relations between climate change and disease dynamics should be followed closely. Under current conditions, climate change associated economic impacts are estimated to be neutral if some form of adaptation is integrated. Therefore, it is essential to establish and adopt mitigation strategies covering available tools from management, nutrition, health and plant and animal breeding to cope with the future consequences of climate change on dairy farming.
Effect of farming practices for greenhouse gas mitigation and subsequent alternative land use on environmental impacts of beef cattle production systems
- T. T. H. Nguyen, M. Doreau, M. Eugène, M. S. Corson, F. Garcia-Launay, G. Chesneau, H. M. G. van der Werf
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- Published online by Cambridge University Press:
- 29 November 2012, pp. 860-869
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This study evaluated effects of farming practice scenarios aiming to reduce greenhouse gas (GHG) emissions and subsequent alternative land use on environmental impacts of a beef cattle production system using the life cycle assessment approach. The baseline scenario includes a standard cow–calf herd with finishing heifers based on grazing, and a standard bull-fattening herd using a diet mainly based on maize silage, corresponding to current farm characteristics and management by beef farmers in France. Alternative scenarios were developed with changes in farming practices. Some scenarios modified grassland management (S1: decreasing mineral N fertiliser on permanent grassland; S2: decreasing grass losses during grazing) or herd management (S3: underfeeding of heifers in winter; S4: fattening female calves instead of being reared at a moderate growth rate; S5: increasing longevity of cows from 7 to 9 years; S6: advancing first calving age from 3 to 2 years). Other scenarios replaced protein sources (S7: partially replacing a protein supplement by lucerne hay for the cow–calf herd; S8: replacing soya bean meal with rapeseed meal for the fattening herd) or increased n-3 fatty acid content using extruded linseed (S9). The combination of compatible scenarios S1, S2, S5, S6 and S8 was also studied (S10). The impacts, such as climate change (CC, not including CO2 emissions/sequestration of land use and land-use change, LULUC), CC/LULUC (including CO2 emissions of LULUC), cumulative energy demand, eutrophication (EP), acidification and land occupation (LO) were expressed per kg of carcass mass and per ha of land occupied. Compared with the baseline, the most promising practice to reduce impacts per kg carcass mass was S10 (all reduced by 13% to 28%), followed by S6 (by 8% to 10%). For other scenarios, impact reduction did not exceed 5%, except for EP (up to 11%) and LO (up to 10%). Effects of changes in farming practices (the scenarios) on environmental impacts varied according to impact category and functional unit. For some scenarios (S2, S4, S6 and S10), permanent grassland area and LO per kg of carcass decreased by 12% to 23% and 9% to 19%, respectively. If the ‘excess’ permanent grassland was converted to fast-growing conifer forest to sequester carbon in tree and soil biomass, CC/LULUC per kg of carcass could be reduced by 20%, 25%, 27% and 48% for scenarios S2, S4, S6 and S10, respectively. These results illustrate the potential of farming practices and forest as an alternative land use to contribute to short- and mid-term GHG mitigation of beef cattle production systems.
e-Dairy: a dynamic and stochastic whole-farm model that predicts biophysical and economic performance of grazing dairy systems
- J. Baudracco, N. Lopez-Villalobos, C. W. Holmes, E. A. Comeron, K. A. Macdonald, T. N. Barry
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- Published online by Cambridge University Press:
- 20 December 2012, pp. 870-878
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A whole-farm, stochastic and dynamic simulation model was developed to predict biophysical and economic performance of grazing dairy systems. Several whole-farm models simulate grazing dairy systems, but most of them work at a herd level. This model, named e-Dairy, differs from the few models that work at an animal level, because it allows stochastic behaviour of the genetic merit of individual cows for several traits, namely, yields of milk, fat and protein, live weight (LW) and body condition score (BCS) within a whole-farm model. This model accounts for genetic differences between cows, is sensitive to genotype × environment interactions at an animal level and allows pasture growth, milk and supplements price to behave stochastically. The model includes an energy-based animal module that predicts intake at grazing, mammary gland functioning and body lipid change. This whole-farm model simulates a 365-day period for individual cows within a herd, with cow parameters randomly generated on the basis of the mean parameter values, defined as input and variance and co-variances from experimental data sets. The main inputs of e-Dairy are farm area, use of land, type of pasture, type of crops, monthly pasture growth rate, supplements offered, nutritional quality of feeds, herd description including herd size, age structure, calving pattern, BCS and LW at calving, probabilities of pregnancy, average genetic merit and economic values for items of income and costs. The model allows to set management policies to define: dry-off cows (ceasing of lactation), target pre- and post-grazing herbage mass and feed supplementation. The main outputs are herbage dry matter intake, annual pasture utilisation, milk yield, changes in BCS and LW, economic farm profit and return on assets. The model showed satisfactory accuracy of prediction when validated against two data sets from farmlet system experiments. Relative prediction errors were <10% for all variables, and concordance correlation coefficients over 0.80 for annual pasture utilisation, yields of milk and milk solids (MS; fat plus protein), and of 0.69 and 0.48 for LW and BCS, respectively. A simulation of two contrasting dairy systems is presented to show the practical use of the model. The model can be used to explore the effects of feeding level and genetic merit and their interactions for grazing dairy systems, evaluating the trade-offs between profit and the associated risk.