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Milk coagulation properties are moderately heritable in dairy cows: a meta-analysis using the random-effects model

Published online by Cambridge University Press:  17 August 2023

Navid Ghavi Hossein-Zadeh*
Affiliation:
Department of Animal Science, Faculty of Agricultural Sciences, University of Guilan, Rasht, Iran
*
Corresponding author: Navid Ghavi Hossein-Zadeh; Email: nhosseinzadeh@guilan.ac.ir
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Abstract

This study aimed to conduct a meta-analysis using the random-effects model to merge published genetic parameter estimates for milk coagulation properties (MCP: comprising rennet coagulation time (RCT), curd-firming time (k20), curd firmness 30 min after rennet addition (a30), titrable acidity (TA) and milk acidity or pH) in dairy cows. Overall, 80 heritability estimates and 157 genetic correlations from 23 papers published between 1999 and 2020 were used. The heritability estimates for RCT, a30, k20, TA, and pH were 0.273, 0.303, 0.278, 0.189 and 0.276, respectively. The genetic correlation estimates between RCT-a30, RCT-pH, and RCT-TA were 0.842, 0.549 and −0.565, respectively. Genetic correlation estimates between RCT and production traits were generally low and ranged from −0.142 (between RCT and casein content) to 0.094 (between RCT and somatic cell score). Moderate and significant genetic correlations were observed between a30-pH (−0.396) and a30-TA (0.662). Also, the genetic correlation estimates between a30 and production traits were low to moderate and varied from −0.165 (between a30 and milk yield) to 0.481 (between a30 and casein content). Genetic correlation estimates between pH and production traits were low and varied from −0.190 (between pH and milk protein percentage) to 0.254 (between pH and somatic cell score). The results of this meta-analysis indicated the existence of additive genetic variation for MCP that could be used in genetic selection programs for dairy cows. Because of the moderate heritability of MCP and small genetic correlations with production traits, it could be possible to improve MCP with negligible correlated effects on production traits.

Type
Research Article
Copyright
Copyright © The Author(s), 2023. Published by Cambridge University Press on behalf of Hannah Dairy Research Foundation

World demand for dairy products is expanding, and further development of trade in dairy products is anticipated. Besides, in recent years, there has been a growing interest in milk components with potential advantages for human health (Toffanin et al., Reference Toffanin, Penasa, McParland, Berry, Cassandro and De Marchi2015). The significance of milk composition in the production process of dairy products is well accepted (Williams, Reference Williams2003; Murphy et al., Reference Murphy, Martin, Barbano and Wiedmann2016), which implies the importance of including milk composition traits in different dairy cow breeding goals (Miglior et al., Reference Miglior, Muir and Van Doormaal2005). Milk processability, which indicates the possibility of converting milk into different dairy products such as cheese and milk powder, is a major feature of milk composition. Despite this, milk processability is not precisely included in dairy cow breeding goals (Visentin et al., Reference Visentin, De Marchi, Berry, McDermott, Fenelon, Penasa and McParland2017).

Milk processability indicators are generally identified as milk coagulation properties (MCP), and these mainly involve rennet coagulation time (RCT), curd-firming time (k20), curd firmness 30 min after rennet addition (a30), titrable acidity (TA), and milk acidity or pH. Good MCP is required for the process of cheese production. MCP is affected by genetic and non-genetic factors (Bittante et al., Reference Bittante, Penasa and Cecchinato2012) including breed, somatic cell count, milk protein composition, casein composition and stage of lactation (Tyrisevä et al., Reference Tyrisevä, Vahlsten, Ruottinen and Ojala2004; Cassandro et al., Reference Cassandro, Comin, Ojala, Dal Zotto, De Marchi, Gallo, Carnier and Bittante2008; Bittante et al., Reference Bittante, Penasa and Cecchinato2012). Ikonen et al. (Reference Ikonen, Morri, Tyrisevä, Ruottinen and Ojala2004) stated that MCP is heritable and could be improved in genetic selection plans. The problem with MCP relates to difficulties in measuring its phenotype in a routine, timely manner and at a low cost on individual cows. This complicates the collection of an adequate number of reliable phenotypes for MCP to warrant genetic selection in dairy herds. Therefore, an alternative method could be the selection and improvement of traits that favourably associate with MCP (Duchemin et al., Reference Duchemin, Nilsson, Fikse, Stålhammar, Buhelt Johansen, Stenholdt Hansen, Lindmark-Månsson, de Koning, Paulsson and Glantz2020).

In previous years, genetic parameters have been estimated for MCP in different dairy cattle breeds. However, these estimates have been obtained from studies based on populations of different breeds and lactations, generally with limited sample size and considering various effects in the model, all of which has contributed to large associated standard errors of the estimated (co) variance components. This has led to high variability among genetic parameter estimates. Meta-analysis is a statistical method to systematically evaluate the results of previous research studies to get a comprehensive conclusion on a specific topic. Two well-known statistical models for the meta-analysis are the fixed- and random-effects models. Performing a meta-analysis using the random-effects model is considered a conservative method because it can supply estimates closest to the actual parameters. The heterogeneity of variance among different studies is accounted for in random-effects meta-analysis models (Borenstein et al., Reference Borenstein, Hedges, Higgins, Rothstein and Sharples2009; Ghavi Hossein-Zadeh, Reference Ghavi Hossein-Zadeh2021), and, therefore, this is generally the recommended approach (Lean et al., Reference Lean, Rabiee, Duffield and Dohoo2009). To the author's knowledge, a particular meta-analysis of the genetic parameter estimates for MCP in dairy cows has not been yet reported in the literature. Therefore, this study aimed to perform a meta-analysis based on a random-effects model to merge published heritability estimates for these traits and their genetic correlations with production traits in dairy cows.

Material and methods

Characterizing the scope of the meta-analysis study

A systematic search of the literature using electronic databases of ISI Web of Knowledge (https://apps.webofknowledge.com), Google Scholar (https://scholar.google.com), NCBI (https://www.ncbi.nlm.nih.gov), and ResearchGate (https://www.researchgate.net) was conducted to identify all references reporting genetic parameter estimates for MCP and milk pH in dairy cows. The most exhaustive research query was built, using synonyms and derivatives of the following keywords: ‘dairy cow’, ‘milk coagulation properties’, ‘milk acidity’, ‘genetic parameters’, ‘heritability’, ‘genetic correlation’, ‘genetic evaluation’ and ‘performance traits’. In total, 80 heritability and 157 genetic correlation estimates from 23 peer-reviewed articles were used in the present study. The considered articles were published between 1999 and 2020 (online Supplementary Table S1) and the literature cited in the articles was also checked. The estimates were derived from restricted maximum likelihood (REML) and Bayesian inference estimation methods on a mixed model. Only articles published in indexed journals and the proceedings of scientific conferences were included in this meta-analysis study. The MCP attributes considered in this study were rennet coagulation time (RCT), curd-firming time (k20), curd firmness 30 min after rennet addition (a30), titrable acidity (TA), and milk acidity or pH.

Data recorded and variable transformation

The data sets included information on direct heritability estimates for RCT, k20, a30, TA, and pH as well as genetic correlations between these traits and the performance traits milk yield (MY), milk fat percentage (FP), milk protein percentage (PP), somatic cell score (SCS), casein percentage (CN) and lactose percentage (Lac), and standard errors for these published parameter estimates. Other information recorded was the publication year, journal name, the number of records, breed name, parity, country of origin, years of data collection, phenotypic mean and standard deviation, the estimation method used (REML or Bayesian) and model of analysis (univariate or multivariate). Once an estimate of a genetic parameter that was similar was reported in multiple publications, based on the same data set, the latest estimate was considered in the meta-analysis. Moreover, the analysis was performed exclusively for traits in which the parameter estimates were placed on not less than two distinct data sets.

For articles in which the standard errors for the heritability or correlation estimates were not reported, approximated standard errors were derived by using the combined-variance method (Sutton et al., Reference Sutton, Abrams, Jones, Sheldon and Song2000), which is given by the following formula:

$${\rm S}{\rm E}_{ij} = \sqrt {\left({\displaystyle{{\sum\nolimits_{k = 1}^K {s_{ik}^2 n_{ik}^2 } } \over {\sum\nolimits_{k = 1}^K {n_{ik}/{{n}^{\prime} \!}_{ij}} }}} \right)} $$

where SEij is the predicted standard error for the published parameter estimate for the ith trait in the j th article that has not reported the standard error, sik is the published standard error for the parameter estimate for the i th trait in the k th article that has reported the standard error, nik is the number of used records to predict the published parameter estimate for the i th trait in the k th article that has reported the standard error, and ij is the number of used records to predict the published parameter estimate for the i th trait in the j th article that has not reported the standard error.

Most meta-analyses do not use the published correlation estimate itself because it usually does not have a normal distribution. Rather, the published correlation is converted to the Fisher's Z scale, and all analyses are performed using the transformed values. The results, such as the estimated parameter and its confidence interval, would then be converted back to correlations for presentation (Borenstein et al., Reference Borenstein, Hedges, Higgins, Rothstein and Sharples2009). The approximate normal scale based on Fisher's Z transformation (Steel and Torrie, Reference Steel and Torrie1960; Borenstein et al., Reference Borenstein, Hedges, Higgins, Rothstein and Sharples2009) is as follows:

$$Z_{ij} = 0.5[ {\ln ( {1 + r_{g_{ij}}} ) -\ln ( {1-r_{g_{ij}}} ) } ] $$

where rgij is the published genetic correlation estimate for the i th trait in the j th article. To return to the original scale, the following equation (Borenstein et al., Reference Borenstein, Hedges, Higgins, Rothstein and Sharples2009) was used:

$$r_{g_{ij}}^\ast \; { = } \; \displaystyle{{e^{2Z_{ij}}-1} \over {e^{2Z_{ij}} + 1}}$$

where $r_{g_{ij}}^\ast $ is the re-transformed genetic correlation for the i th trait in the j th article, and Zij is the Fisher's Z transformation.

Phenotypic trait

Means and standard deviations were calculated for all traits using the sample sizes as weights. The total number of records for each phenotypic trait was calculated as the sum of the number of records in each article that reported the trait. The coefficient of variation in percentage (CVi(%)) for each i th trait was calculated as follows:

$${\rm C}{\rm V}_i( \% ) = \displaystyle{{s_i} \over {{\bar{X}}_i}} \times 100$$

where si is the standard deviation for the i th trait and $\bar{X}_i$ is the trait mean.

Heritabilities and genetic correlations

Meta-analysis was performed based on a random-effects model (Borenstein et al., Reference Borenstein, Hedges, Higgins, Rothstein and Sharples2009) using the comprehensive meta-analysis (CMA) software version 2.2 (Biostat, USA) to calculate the effect size for genetic parameter estimates. In the random-effects model, observed differences among study results are due to the play of chance in repeated sampling and random changes in real values of parameters. The general form of the random-effects model was as follows:

$$\hat{\theta }_j = \bar{\theta } + u_j + e_j$$

where $\hat{\theta }_j$ is the published parameter estimate in the j th article, $\bar{\theta }$ is the weighted population parameter mean, uj is the among study component of the deviation from the mean, assumed as u j ~ N(0, τ 2), where τ 2 is the variance representing the amount of heterogeneity among studies, ej is the within-study component due to sampling error in the parameter estimate in the j th article, assumed as $e_j\sim N( {0, \;\sigma_e^2 } ) $, where $\sigma _e^2 $ is the within-study variance. Forest plots were constructed to indicate the effect size for each study. Effect sizes for forest plots were the mean heritability estimates for conformation traits or genetic correlation estimates at a 95% confidence interval using the random-effects model.

Heterogeneity

Chi-square (Q) test and the I 2 statistic were performed to measure heterogeneity. Variation among the study level was assessed using a Q test. The significance level was set at 0.1 because the Q test has relatively low power when a few studies are included (Lean et al., Reference Lean, Rabiee, Duffield and Dohoo2009). Although the Q test helps identify heterogeneity, the measure I 2 was used to measure heterogeneity as follows (Lean et al., Reference Lean, Rabiee, Duffield and Dohoo2009):

$$I^2( \% ) = \displaystyle{{Q-( {k-1} ) } \over Q} \times 100$$

where Q is the χ2 heterogeneity statistic and k is the number of studies. Q is the Q statistics given by the following formula:

$$Q = \sum\limits_{\,j = 1}^k {w_j( {{\hat{\theta }}_j-\bar{\theta }} ) } ^2$$

where wj is the parameter estimate weight (assumed as the inverse of published sampling variance for the parameter, $1/s_j^2 $) in the j th article; $\hat{\theta }_j$ and $\bar{\theta }$ were defined above in the random-effects model, and k is the number of used articles. The I2 statistic describes the percentage of variation across studies due to heterogeneity. Negative values of I2 are set equal to zero; consequently, I2 lies between 0 and 100% (Lean et al., Reference Lean, Rabiee, Duffield and Dohoo2009). Its value might not be important if it falls within the range of 0–40%. However, a value of 40–60% often indicates moderate heterogeneity and a value in the range of 60–100% represents considerable heterogeneity. The 95% lower and upper limits for the estimated parameter would be computed respectively for each trait as follows:

$${\rm L}{\rm L}_{\bar{\theta }} = \bar{\theta }-1.96 \times {\rm S}{\rm E}_{\bar{\theta }}\;{\rm and}\;{\rm U}{\rm L}_{\bar{\theta }} = \bar{\theta } + 1.96 \times {\rm S}{\rm E}_{\bar{\theta }}$$

where ${\rm S}{\rm E}_{\bar{\theta }}$ is the predicted standard error for the estimated parameter $\bar{\theta }$, given by:

$${\rm S}{\rm E}_{\bar{\theta }} = \sqrt {\displaystyle{1 \over {\sum\nolimits_{\,j = 1}^k {w_j} }}} $$

Publication bias

Egger's linear regression asymmetry was used to examine the presence of publication bias. When significant bias was detected (P < 0.10) the trim-and-fill method (Duval and Tweedie, Reference Duval and Tweedie2000) was applied to find the number of missing studies.

Funnel plots were used to present asymmetry. This technique indicates the symmetric distribution of effect sizes around the true effect size. No publication bias suggests that the most extreme results have not been published. Once the number of missing observations is estimated, estimated missing values are included to recalculate a weighted mean effect size and its variance. When heterogeneity (Q test, P < 0.10) was detected for the parameters analysed, testing for the occurrence of possible publication bias is not appropriate because it may lead to false-positive claims (Ioannidis and Trikalinos, Reference Ioannidis and Trikalinos2007).

Results

Descriptive statistics

The number of literature estimates, measurement units, the total number of records, weighted mean, standard deviation, and coefficient of variation for MCP of dairy cows are indicated in Table 1. The weighted coefficients of variation for MCP were generally low to moderate and varied from 0.75 (for pH) to 24.86% (for a30).

Table 1. Number of literature estimates (N), measurement units (Unit), the total number of records (Records), weighted mean, standard deviation (sd), and coefficient of variation (CV) for MCP of dairy cows

RCT, Rennet coagulation time; a30, Curd firmness; k20, Curd firming time; TA, Titrable acidity.

Heritability estimates

Effect size and heterogeneity of the heritability estimates for MCP obtained from the random-effects model of the meta-analysis are presented in Table 2. The heritability estimates for RCT, a30, k20, TA, and pH were 0.273, 0.303, 0.278, 0.189, and 0.276, respectively. These estimates generally had low standard errors, and their 95% confidence intervals were small. Also, the heritability estimates for MCP were significant (P < 0.05). The heterogeneity test of heritability estimates, conducted by Q statistic, indicated that heritability estimates for a30, k20, and pH had high Q values and significant heterogeneity (P < 0.10), but heritability estimates for RCT and TA had non-significant heterogeneity (P > 0.10). In agreement with the results observed by Q statistic, the I2 values showed considerable heterogeneity for the heritability estimates of a30, k20, and pH, but negligible heterogeneity for the heritability estimates of RCT and TA (Table 2). The forest plots of individual studies and the overall outcome for heritability estimates of MCP in dairy cows are indicated in online Supplementary Figs S1 to S5. The funnel plot of mean heritability estimates for RCT and TA are shown in Figs 1 and 2. Results from statistical tests to evaluate publication bias and the trim-and-fill method to correct funnel plot asymmetry in heritability estimates of RCT and TA that did not present heterogeneity showed that one and two missing studies were needed at the left side of the funnel plot for RCT and TA to correct funnel plot asymmetry according to the trim-and-fill method, respectively (Table 3). After correcting the funnel plot asymmetry by including the imputed studies, the mean heritability estimates for RCT and TA were 0.272 and 0.173, respectively (Table 3).

Table 2. Effect size and heterogeneity of the heritability estimates for MCP in dairy cows obtained from the random-effects model of meta-analysis

a For traits, see Table 1.

Figure 1. The funnel plot of the heritability estimates for RCT. The solid dots are the potentially missing studies imputed from the trim-and-fill method. The open diamond represents the mean and confidence interval of the existing studies and the solid diamond represents the mean and confidence interval if the theoretically imputed studies were included in the meta-analysis.

Figure 2. The funnel plot of the heritability estimates for TA. Detailed information is provided in Fig. 1.

Table 3. Results from statistical tests to evaluate publication bias and the trim-and-fill method to correct funnel plot asymmetry in mean heritability estimates of MCP that did not present heterogeneity

a For traits, see Table 1. Missing: Number of missing studies.

Genetic correlation estimates

Effect size and heterogeneity of the genetic correlation estimates between MCP and production traits of dairy cows are shown in Table 4. The genetic correlation estimates between RCT-a30, RCT-pH, and RCT-TA were −0.842, 0.549 and −0.565, respectively (P < 0.05). Genetic correlation estimates between RCT and production traits were generally low and ranged from −0.142 (between RCT and CN) to 0.094 (between RCT and SCS). Except for the genetic correlation estimate between RCT and SCS, the genetic correlations between RCT and other production traits were non-significant (P > 0.05). For non-significant genetic correlation estimates, 95% CI included zero. Therefore, these correlation estimates could not be statistically different from zero. Moderate and significant genetic correlations were observed between a30-pH (−0.396) and a30-TA (0.662). Also, the genetic correlation estimates between a30 and production traits were low to moderate and varied from −0.165 (between a30 and MY) to 0.481 (between a30 and CN). Except for the genetic correlations between a30 and MY, SCS and Lac, genetic correlation estimates between a30 and other production traits were significant and statistically different from zero (P < 0.05). Genetic correlation estimates between pH-FP and pH-PP were −0.156 and −0.190, respectively (P < 0.05). Genetic correlation estimates between pH and MY, SCS, and CN were low and non-significant (P > 0.05). Therefore, genetic correlations between pH and MY, pH and SCS, and finally pH and CN could not be statistically different from zero. The heterogeneity test of genetic correlation estimates, conducted by Q statistic, indicated that except for the genetic correlations between RCT and SCS, RCT and Lac, RCT and TA and finally a30 and TA, which had low Q values and non-significant heterogeneity (P > 0.10), the genetic correlations between MCT traits with production traits showed significant heterogeneities (P < 0.10) with greater Q values (Table 4). Consistent with the Q values, the I2 values indicated negligible heterogeneities for the genetic correlations between RCT and SCS, RCT and Lac, RCT and TA and finally a30 and TA, but considerable heterogeneities for genetic correlation estimates among other traits (Table 4).

Table 4. Effect size and heterogeneity of the genetic correlation estimates between MCP and production traits in dairy cows obtained from the random-effects model of meta-analysis

RCT, Rennet coagulation time; a30, Curd firmness; k20, Curd firming time; TA, Titrable acidity; Milk yield (MY), milk fat percentage (FP), milk protein percentage (PP); SCS, Somatic cell score; CN, Casein percentage; Lac, Lactose percentage;rg, Genetic correlation.

The forest plots of individual studies and the overall outcome for the genetic correlation estimates between MCP are depicted in online Supplementary Figs S6 to S10. The funnel plots of the mean genetic correlation estimates between RCT and SCS, RCT and Lac, RCT and TA and finally a30 and TA are presented in Figs 3–6, respectively. Results of statistical tests to examine publication bias and the trim-and-fill method to adjust funnel plot asymmetry in genetic correlation estimates that did not indicate heterogeneity are presented in Table 5. The results of Egger's test showed non-significant (P > 0.10) publication bias for the genetic correlation estimates between RCT and SCS, RCT and Lac and finally RCT and TA (Table 5). Two missing studies were required on the left side of the funnel plot for genetic correlation between RCT and SCS, and one missing study was required on the left side of the funnel plot for genetic correlation between RCT and Lac to obtain funnel plot symmetry based on the trim-and-fill method (Table 5). Also, one missing study was required on the right side of the funnel plot for genetic correlation between RCT and TA to obtain funnel plot symmetry. After correcting the funnel plot asymmetry by including the imputed studies, the genetic correlation estimates of RCT and SCS, RCT and Lac and finally RCT and TA were 0.067, −0.007, −0.541 and 0.662, respectively (Table 5).

Figure 3. The funnel plot of the genetic correlation estimates between RCT-SCS. Detailed information is provided in Fig. 1.

Figure 4. The funnel plot of the genetic correlation estimates between RCT-Lac. Detailed information is provided in Fig. 1.

Figure 5. The funnel plot of the genetic correlation estimates between RCT-TA. Detailed information is provided in Fig. 1.

Figure 6. The funnel plot of the genetic correlation estimates between a30-TA. Detailed information is provided in Fig. 1.

Table 5. Results from Egger's test to assess publication bias and implementing the method of trim-and-fill to adjust the asymmetry of funnel plot for genetic correlations of MCP with production traits in dairy cows

a For traits, see Tables 1 and 3. Missing: Number of missing studies.

Discussion

Interest in the improvement of MCP has increased in recent years. It has been extensively demonstrated that milk with desirable clotting characteristics, namely relatively short clotting time, suitable firming rate and high curd firmness at the cut, leads to higher cheese yield than poorly coagulating milk (Pretto et al., Reference Pretto, De Marchi, Penasa and Cassandro2013; Tiezzi et al., Reference Tiezzi, Pretto, De Marchi, Penasa and Cassandro2013) resulting in increased profitability for the dairy industry (Formaggioni et al., Reference Formaggioni, Sandri, Franceschi, Malacarne and Mariani2005). The improvement of MCP is strongly recommended to increase dairy sector efficiency, especially in countries where milk is mainly intended for cheese production (Geary et al., Reference Geary, Lopez-Villalobos, Garrick and Shalloo2010; Tiezzi et al., Reference Tiezzi, Pretto, De Marchi, Penasa and Cassandro2013). Assessing genetic variation in MCP parameters and evaluating their genetic associations with production traits will be helpful for the development of novel management and breeding programs in dairy cows. In this regard, Wood et al. (Reference Wood, Boettcher, Jamrozik, Jansen and Kelton2003) stated three preconditions would be required. First, MCP must be sufficiently heritable for a relatively rapid and substantial improvement. Second, it is necessary to prove the presence of adequate genetic variability for these traits in dairy cow populations. Third, it is required to know the genetic relationships between MCP and economically important traits in the under-study population. For including MCP in effective genetic evaluation and improvement programs, understanding the genetic parameters for these traits is necessary.

The lowest weighted coefficient of variation was observed for milk pH (0.75%), showing the limited phenotypic variation for this trait from a biological view. Also, this low weighted coefficient of variation indicated a low dispersion around the weighted mean of the trait among studies. This result implied the more accurate weighted mean estimate for milk pH. On the other hand, the greatest weighted coefficient of variation was estimated for a30 (24.86%), indicating greater phenotypic variation in this trait than in other traits.

The standard errors and 95% confidence intervals of the mean heritability estimates of MCP were low, which implies the appropriate precision of mean heritability estimates reported in the current study. In general, the moderate heritability estimates observed for MCP indicated the moderate influence of additive genetic effects on the expression of the studied traits. The moderate heritability estimates for major MCP indicated the existence of an exploitable additive genetic variation for these traits that could be used in genetic selection plans. Although heritability would influence the rate of genetic gain, this rate also depends on other effective factors such as genetic variation, selection intensity and generation interval. Because meta-analysis integrates published genetic parameter estimates reported by different studies, the difference in the actual parameter among the studies could be expected (Ghavi Hossein-Zadeh, Reference Ghavi Hossein-Zadeh2022). Several factors might explain the inconsistencies among genetic parameter estimates reported in different studies, such as sample size, the investigated breeds, models and methods of estimations as well as variation across laboratories (Cassandro et al., Reference Cassandro, Comin, Ojala, Dal Zotto, De Marchi, Gallo, Carnier and Bittante2008).

As indicated, RCT and a30 were highly correlated because coagulation and firming are consecutive steps of the same process. If milk takes a short time to coagulate, it leaves more time for curd firming and has better coagulation ability, thus, the final curd will be firmer. Conversely, if milk takes a long time to coagulate, the curd will have less time to firm and be weaker (Cassandro et al., Reference Cassandro, Comin, Ojala, Dal Zotto, De Marchi, Gallo, Carnier and Bittante2008). The results of this study showed that desirable MCP (i.e., short coagulation time and high curd firmness) were markedly associated with the acidity of milk, measured both as milk pH and TA. Because milk pH and TA can be measured more easily than MCP, enhancement of MCP could be achieved through indirect selection based on these indicator traits. The genetic correlations between MCP and production traits were generally negligible and near zero or non-significant. The non-significant genetic correlation estimates between MCP and production traits had 95% CI which included zero. Thus, these genetic correlations must be interpreted with caution. This lack of genetic association proposes that selection for MCP would not cause a significant change in milk production traits in dairy cows. On the other hand, the selection of production traits is unlikely to influence MCP. The negligible genetic correlations between MCP and production traits indicated distinct genetic and physiological mechanisms controlling these traits. These results show that the correlated response of milk coagulation ability to changes in milk yield and composition, as dictated by current breeding goals of dairy cattle populations, is expected to be restricted. MCP exhibited positive but low genetic correlations with RCT and pH. Because current breeding objectives for dairy cow populations favor low SCS, these correlations are considered desirable. Low milk pH and high TA correlated with short RCT and high a30, which are desirable milk properties for cheese making. This suggests that variation in milk acidity might be used to increase the coagulation ability of milk (Cecchinato and Carnier, Reference Cecchinato and Carnier2011). Low SCS was correlated with high a30, which is desirable for cheese making. A possible explanation is that increased somatic cell count is associated with increased plasmin activity. The accumulation of plasmin degradation products might also affect coagulation because these components interfere with the aggregating micelles responsible for curd formation (Politis and Ng-Kwai-Hang, Reference Politis and Ng-Kwai-Hang1988; Cecchinato and Carnier, Reference Cecchinato and Carnier2011). A moderate and positive genetic correlation was observed between a30 and CN. The important role of CN content in determining a30 variation has been reported in previous studies (Summer et al., Reference Summer, Formaggioni, Tosi, Fossa and Mariani1999; Malacarne et al., Reference Malacarne, Summer, Fossa, Formaggioni, Franceschi, Pecorari and Mariani2006). The a30 parameter indicated moderate relationships with milk acidity traits (pH and TA). Okigbo et al. (Reference Okigbo, Richardson, Brown and Ernstrom1985) reported that a30 decreased when pH increased and, generally, milk samples did not coagulate when pH was greater than 6.85. Ikonen et al. (Reference Ikonen, Morri, Tyrisevä, Ruottinen and Ojala2004) indicate that pH modifications exert significant effects on a30. Changes in pH are known to affect enzyme activity (Okigbo et al., Reference Okigbo, Richardson, Brown and Ernstrom1985). The positive and moderate to high genetic correlations between some traits (such as between RCT and TA, a30 and pH and finally a30 and TA) are evidence for common genetic and physiological mechanisms controlling these traits.

In conclusion, because genetic parameter estimates from one animal population cannot be used for other breeds or populations, the combined estimates obtained through meta-analysis can be a reliable alternative. The results of this meta-analysis indicated moderate heritability estimates for MCP. Therefore, an exploitable additive genetic variation for these traits could be used in genetic selection plans for dairy cows. Because of the moderate heritability of MCP and small genetic correlations with production traits, it could be possible to improve MCP with negligible correlated effects on production traits.

Supplementary material

The supplementary material for this article can be found at https://doi.org/10.1017/S0022029923000444.

References

Bittante, G, Penasa, M and Cecchinato, A (2012) Invited review: genetics and modeling of milk coagulation properties. Journal of Dairy Science 95, 68436870.CrossRefGoogle ScholarPubMed
Borenstein, M, Hedges, LV, Higgins, J and Rothstein, HR (2009) Random effects model. In Sharples, K (ed.), Introduction to Meta-analysis. Chichester, UK: John Wiley and Sons, pp. 6975.CrossRefGoogle Scholar
Cassandro, M, Comin, A, Ojala, M, Dal Zotto, R, De Marchi, M, Gallo, L, Carnier, P and Bittante, G (2008) Genetic parameters of milk coagulation properties and their relationships with milk yield and quality traits in Italian Holstein cows. Journal of Dairy Science 91, 371376.CrossRefGoogle ScholarPubMed
Cecchinato, A and Carnier, P (2011) Short communication: statistical models for the analysis of coagulation traits using coagulating and noncoagulating milk information. Journal of Dairy Science 94, 42144219.CrossRefGoogle ScholarPubMed
Duchemin, SI, Nilsson, K, Fikse, WF, Stålhammar, H, Buhelt Johansen, L, Stenholdt Hansen, M, Lindmark-Månsson, H, de Koning, DJ, Paulsson, M and Glantz, M (2020) Genetic parameters for noncoagulating milk, milk coagulation properties, and detailed milk composition in Swedish Red dairy cattle. Journal of Dairy Science 103, 83308342.CrossRefGoogle ScholarPubMed
Duval, S and Tweedie, R (2000) A nonparametric”trim and fill” method of accounting for publication bias in meta-analysis. Journal of the American Statistical Association 95, 8998.Google Scholar
Formaggioni, P, Sandri, S, Franceschi, P, Malacarne, M and Mariani, P (2005) Milk acidity, curd firming time, curd firmness and protein and fat losses in the Parmigiano-Reggiano cheesemaking. Italian Journal of Animal Science 4, S239S241.CrossRefGoogle Scholar
Geary, U, Lopez-Villalobos, N, Garrick, DJ and Shalloo, L (2010) Development and application of a processing model for the Irish dairy industry. Journal of Dairy Science 93, 50915100.CrossRefGoogle ScholarPubMed
Ghavi Hossein-Zadeh, N (2021) A meta-analysis of heritability estimates for milk fatty acids and their genetic relationship with milk production traits in dairy cows using a random-effects model. Livestock Science 244, 104388.CrossRefGoogle Scholar
Ghavi Hossein-Zadeh, N (2022) Estimates of the genetic contribution to methane emission in dairy cows: a meta-analysis. Scientific Reports 12, 12352.CrossRefGoogle ScholarPubMed
Ikonen, T, Morri, S, Tyrisevä, A-M, Ruottinen, O and Ojala, M (2004) Genetic and phenotypic correlations between milk coagulation properties, milk production traits, somatic cell count, casein content, and pH of milk. Journal of Dairy Science 87, 458467.CrossRefGoogle Scholar
Ioannidis, JPA and Trikalinos, TA (2007) The appropriateness of asymmetry tests for publication bias in meta-analyses: a large survey. Canadian Medical Association Journal 176, 10911096.CrossRefGoogle Scholar
Lean, I, Rabiee, A, Duffield, T and Dohoo, I (2009) Invited review: use of meta-analysis in animal health and reproduction: methods and applications. Journal of Dairy Science 92, 35453565.CrossRefGoogle ScholarPubMed
Malacarne, M, Summer, A, Fossa, E, Formaggioni, P, Franceschi, P, Pecorari, M and Mariani, P (2006) Composition, coagulation properties and Parmigiano-Reggiano cheese yield of Italian Brown and Italian Friesian herd milks. Journal of Dairy Research 73, 171177.CrossRefGoogle Scholar
Miglior, F, Muir, BL and Van Doormaal, BJ (2005) Selection indices in Holstein cattle of various countries. Journal of Dairy Science 88, 12551263.CrossRefGoogle ScholarPubMed
Murphy, SC, Martin, NH, Barbano, DM and Wiedmann, M (2016) Influence of raw milk quality on processed dairy products: how do raw milk quality test results relate to product quality and yield? Journal of Dairy Science 99, 1012810149.CrossRefGoogle ScholarPubMed
Okigbo, LM, Richardson, GH, Brown, RJ and Ernstrom, CA (1985) Effects of pH, calcium chloride, and chymosin concentration on coagulation properties of abnormal and normal milk. Journal of Dairy Science 68, 25272533.CrossRefGoogle ScholarPubMed
Politis, I and Ng-Kwai-Hang, KF (1988) Effects of somatic cell counts and milk composition on the coagulating properties of milk. Journal of Dairy Science 71, 17401746.CrossRefGoogle Scholar
Pretto, D, De Marchi, M, Penasa, M and Cassandro, M (2013) Effect of milk composition and coagulation traits on Grana Padano cheese yield under field conditions. Journal of Dairy Research 80, 15.CrossRefGoogle ScholarPubMed
Steel, RGD and Torrie, JH (1960) Principles and Procedure of Statistics. New York, USA: McGraw-Hill.Google Scholar
Summer, A, Formaggioni, P, Tosi, F, Fossa, E and Mariani, P (1999) Effects of the hot-humid climate on rennet-coagulation properties of milk produced during summer of 1998 and relationship with the housing systems in the rearing of Italian Friesian cows. Annali della facoltà di medicina veterinaria. Università di Parma 19, 167179.Google Scholar
Sutton, AJ, Abrams, KR, Jones, DR, Sheldon, TA and Song, F (2000) Methods for Meta-analysis in Medical Research. Chichester, UK: John Wiley and Sons.Google Scholar
Tiezzi, F, Pretto, D, De Marchi, M, Penasa, M and Cassandro, M (2013) Heritability and repeatability of milk coagulation properties predicted by mid-infrared spectroscopy during routine data recording, and their relationships with milk yield and quality traits. Animal: An International Journal of Animal Bioscience 7, 15921599.CrossRefGoogle ScholarPubMed
Toffanin, V, Penasa, M, McParland, S, Berry, DP, Cassandro, M and De Marchi, M (2015) Genetic parameters for milk mineral content and acidity predicted by mid-infrared spectroscopy in Holstein-Friesian cows. Animal: An International Journal of Animal Bioscience 9, 775780.CrossRefGoogle ScholarPubMed
Tyrisevä, A-M, Vahlsten, T, Ruottinen, O and Ojala, M (2004) Noncoagulation of milk in Finnish Ayrshire and Holstein-Friesian cows and effect of herds on milk coagulation ability. Journal of Dairy Science 87, 39583966.CrossRefGoogle ScholarPubMed
Visentin, G, De Marchi, M, Berry, DP, McDermott, A, Fenelon, MA, Penasa, M and McParland, S (2017) Factors associated with milk processing characteristics predicted by mid-infrared spectroscopy in a large database of dairy cows. Journal of Dairy Science 100, 32933304.CrossRefGoogle Scholar
Williams, RPW (2003) The relationship between the composition of milk and the properties of bulk milk products. Australian Journal of Dairy Technology 57, 3044.Google Scholar
Wood, GM, Boettcher, PJ, Jamrozik, J, Jansen, GB and Kelton, DF (2003) Estimation of genetic parameters for concentrations of milk urea nitrogen. Journal of Dairy Science 86, 24622469.CrossRefGoogle ScholarPubMed
Figure 0

Table 1. Number of literature estimates (N), measurement units (Unit), the total number of records (Records), weighted mean, standard deviation (sd), and coefficient of variation (CV) for MCP of dairy cows

Figure 1

Table 2. Effect size and heterogeneity of the heritability estimates for MCP in dairy cows obtained from the random-effects model of meta-analysis

Figure 2

Figure 1. The funnel plot of the heritability estimates for RCT. The solid dots are the potentially missing studies imputed from the trim-and-fill method. The open diamond represents the mean and confidence interval of the existing studies and the solid diamond represents the mean and confidence interval if the theoretically imputed studies were included in the meta-analysis.

Figure 3

Figure 2. The funnel plot of the heritability estimates for TA. Detailed information is provided in Fig. 1.

Figure 4

Table 3. Results from statistical tests to evaluate publication bias and the trim-and-fill method to correct funnel plot asymmetry in mean heritability estimates of MCP that did not present heterogeneity

Figure 5

Table 4. Effect size and heterogeneity of the genetic correlation estimates between MCP and production traits in dairy cows obtained from the random-effects model of meta-analysis

Figure 6

Figure 3. The funnel plot of the genetic correlation estimates between RCT-SCS. Detailed information is provided in Fig. 1.

Figure 7

Figure 4. The funnel plot of the genetic correlation estimates between RCT-Lac. Detailed information is provided in Fig. 1.

Figure 8

Figure 5. The funnel plot of the genetic correlation estimates between RCT-TA. Detailed information is provided in Fig. 1.

Figure 9

Figure 6. The funnel plot of the genetic correlation estimates between a30-TA. Detailed information is provided in Fig. 1.

Figure 10

Table 5. Results from Egger's test to assess publication bias and implementing the method of trim-and-fill to adjust the asymmetry of funnel plot for genetic correlations of MCP with production traits in dairy cows

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