Perennial grain crops would address many agricultural problems, including soil erosion, nutrient loss and pesticide contamination. Doubts about the possibility of perennial grain crops rest upon two assumptions: (1) that the relationship between yield and longevity is a fixed function that cannot be influenced by selection, mutation or environmental changes; and (2) that yield and longevity trade off in a bivariate manner to the exclusion of all other traits. These assumptions are consistent with the phenotypic trade-off model, but recent research suggests that a quantitative genetic model is a more appropriate approach to trade-offs. In the quantitative genetic model, environmental and genetic changes can result in increases in two traits simultaneously even when a trade-off, or negative correlation, exists between the two traits. Empirical evidence that the trade-off between perenniality and reproductive allocation is not fixed comes from wild, herbaceous perennials that can produce more than 2000 kg seed ha−1 in the temperate zone, and herbaceous perennial crops that produce on average 8900 kg fruit ha−1 in the tropics. Ecological literature suggests that most perennials produce small amounts of seed relative to their vegetative growth not as a physiological absolute, but rather as a result of natural selection in a stable, competitive environment favoring longevity. By selecting strongly for seed yield in a population of perennial plants, the plant breeder can likely achieve that which is rare in nature—a high seed-yielding perennial plant. The same general methodologies that have allowed annual grain breeders to increase grain yield and push many combinations of negatively correlated traits to levels of expression not seen in nature are available to the perennial grain breeder. Perennial grain breeders are integrating ecological principles and traditional plant breeding methods in their efforts to develop perennial grain wheat (Triticum spp.), sorghum (Sorghum spp.), sunflower (Helianthus spp.), Illinois bundleflower (Desmanthus illinoensis) and rice (Oryza spp.).

Perennial grain production will likely present unique challenges for managing diseases that affect the productivity and longevity of crops being considered. Typical cultural practices effective at reducing soil- and residue-borne pathogens, such as annual crop rotations, delayed fall planting, and tillage, are not feasible in perennial systems. Consequently, soil- and residue-borne pathogens, and pathogens such as root colonizers and viruses that survive in live tissue, may increase in importance in a perennial grain crop. Resistance genes will undeniably be important defenses against disease. However, it is seldom, if ever, possible to incorporate within a single cultivar resistance to all existing and future important diseases. Furthermore, genes vulnerable to ‘boom and bust’ cycles are generally short-lived when deployed in monocultures. For these reasons, the use of mixtures of crop cultivars or species that vary in resistance functions will likely be an important strategy for managing diseases and pests of perennial grains. Burning of plant residue, a natural phenomenon in native perennial grass systems, may also be an effective disease management strategy. The successful implementation of these management tools may reduce or eliminate the risk that perennial grain crops will become pathogen refugia that affect neighboring annual plantings and the productivity of perennial plants.

Perennial cropping systems may achieve significant improvement over annual systems in the synchrony between crop nutrient demands and nutrient supplies. Improvements in nutrient synchrony would result in the reduction of nutrient losses and their associated environmental impacts. A perennial system with high levels of synchrony would also require fewer nutrient inputs, such that it may be possible to develop an agriculture that functions mostly, if not entirely, on nutrient inputs from endogenous sources (i.e., weathering of primary and secondary minerals and biological nitrogen fixation). In this paper I describe three realms of research that will inform the development of relatively high-yielding grain production systems grown on endogenous nutrient supplies: (1) improvement of nutrient synchrony through the development of perennial crops; (2) identification of soils that are in a high nutrient release phase of pedogenesis, which could balance the export of rock-derived nutrients in crop harvests; and (3) optimization of legume density, harvest index and percent nitrogen derived from the atmosphere (%Ndfa) to achieve adequate nitrogen inputs through biological fixation.

Natural systems agriculture is based on an understanding that natural systems are self-sustaining due to regulatory mechanisms and processes that help to ensure the long-term maintenance of the ecosystem. An agroecosystem modeled after nature should encompass greater stability and biodiversity at all levels of organization than an agroecosystem based on conventional agricultural practices. The main objective of this study was to determine whether agroecosystems modeled after nature exhibit advantages over conventional agroecosystems. Five treatments were examined: winter wheat (Triticum aestivum L.) monoculture, alfalfa (Medicago sativa L.) monoculture, strip-cropped alfalfa and wheat, and two alfalfa–wheat intercrops (one no-till and one conservation-till). Indicators of ecosystem function studied included primary productivity, soil fertility, plant nitrogen (N) concentration, and abundances of arthropod pests and predators. No fertilizers or pesticides were used prior to or during this investigation. Monoculture, strip-crop and conservation-till treatments produced significantly higher yields than no-till intercropped alfalfa and wheat. Although yields from the no-till intercrop were low, wheat protein values were comparable to other treatments. Soil N concentrations tended to be high in treatments containing alfalfa. Insect pests preferred alfalfa and were, therefore, often more abundant in treatments containing high percentages of alfalfa, as were predators such as spiders. Researching alternatives to monoculture agroecosystems, such as the intercrop systems in this study, may provide us insight into a true natural systems agriculture.

Organic and low-input farmers often plant seed varieties that have been selected under conventional practices, traditionally including high inputs of artificial fertilizers, crop protection chemicals and/or water. In addition, these crops are often selected in environments that may or may not represent the local environment of the farmer. An evolutionary participatory breeding (EPB) method emphasizes the utilization of natural selection in combination with site-specific farmer selection in early segregating generations of a heterogeneous crop population. EPB is a combination of two specific breeding methods, evolutionary breeding and participatory plant breeding. Evolutionary breeding has been shown to increase yield, disease resistance, genetic diversity and adaptability of a crop population over time. It is based on a mass selection technique used by farmers for over 10,000 years of crop improvement. Participatory plant breeding programs originated in developing countries to meet the needs of low-input, small-scale farmers in marginal environments who were often overlooked by conventional crop breeders. The EPB method is an efficient breeding system uniquely suited to improving crop varieties for the low-input and organic farmer. The EPB method utilizes the skills and knowledge of both breeders and farmers to develop heterogeneous landrace populations, and is an effective breeding method for both traditional and modern farmers throughout the world.

This study was carried out under field conditions with the aim of evaluating the period of time necessary for soil cover, dry matter production and accumulation of nutrients by perennial herbaceous legumes with different phosphorus sources at different levels. Four legumes were evaluated: calopo (Calopogonium mucunoides Desv.), forage groundnut (Arachis pintoi Krap. & Greg.), siratro (Macroptilium atropurpureum (OC.) Urb.) and tropical kudzu (Pueraria phaseoloides (Roxb.) Benth.). Each of these species received different phosphorus (P) sources and levels: no phosphate fertilization; 44 and 88 kg of P ha−1 applied as rock phosphate; and 44 kg of P ha−1 as triple superphosphate. Calopo, siratro and tropical kudzu completely covered the soil surface 129 days before forage groundnut. Phosphate fertilization did not increase the dry matter production of any species. The legumes forage groundnut, siratro and tropical kudzu showed desirable characteristics that promote their use as cover crops, such as high dry matter production and shoot accumulation of nitrogen (N) and potassium (K). Forage groundnut had the highest proportion of N derived from the atmosphere at the end of the rainy season, while there were no significant differences between the legumes at the end of the dry season. There was an elevation of soil pH and calcium+magnesium (Ca+Mg) contents, associated with a reduction of aluminum (Al) content, in the surface soil layer (0–5 cm) for siratro in relation to groundnut and tropical kudzu. Tropical kudzu promoted higher soil organic C contents when compared to groundnut.