Book contents
- Frontmatter
- Contents
- Preface
- Acknowledgements
- Design and conventions of this book
- 1 Introduction: working with the molecules of life in the computer
- 2 Gene technology: cutting DNA
- 3 Gene technology: knocking genes down
- 4 Gene technology: amplifying DNA
- 5 Human disease: when DNA sequences are toxic
- 6 Human disease: iron imbalance and the iron responsive element
- 7 Human disease: cancer as a result of aberrant proteins
- 8 Evolution: what makes us human?
- 9 Evolution: resolving a criminal case
- 10 Evolution: the sad case of the Tasmanian tiger
- 11 A function to every gene: termites, metagenomics and learning about the function of a sequence
- 12 A function to every gene: royal blood and order in the sequence universe
- 13 A function to every gene: a slimy molecule
- 14 Information resources: learning about flu viruses
- 15 Finding genes: going ashore at CpG islands
- 16 Finding genes: in the world of snurpsp
- 17 Finding genes: hunting for the distant RNA relatives
- 18 Personal genomes: the differences between you and me
- 19 Personal genomes: what’s in my genome?
- 20 Personal genomes: details of family genetics
- Appendix I Brief Unix reference
- Appendix II A selection of biological sequence analysis software
- Appendix III A short Perl reference
- Appendix IV A brief introduction to R
- Index
- References
4 - Gene technology: amplifying DNA
Published online by Cambridge University Press: 05 August 2012
- Frontmatter
- Contents
- Preface
- Acknowledgements
- Design and conventions of this book
- 1 Introduction: working with the molecules of life in the computer
- 2 Gene technology: cutting DNA
- 3 Gene technology: knocking genes down
- 4 Gene technology: amplifying DNA
- 5 Human disease: when DNA sequences are toxic
- 6 Human disease: iron imbalance and the iron responsive element
- 7 Human disease: cancer as a result of aberrant proteins
- 8 Evolution: what makes us human?
- 9 Evolution: resolving a criminal case
- 10 Evolution: the sad case of the Tasmanian tiger
- 11 A function to every gene: termites, metagenomics and learning about the function of a sequence
- 12 A function to every gene: royal blood and order in the sequence universe
- 13 A function to every gene: a slimy molecule
- 14 Information resources: learning about flu viruses
- 15 Finding genes: going ashore at CpG islands
- 16 Finding genes: in the world of snurpsp
- 17 Finding genes: hunting for the distant RNA relatives
- 18 Personal genomes: the differences between you and me
- 19 Personal genomes: what’s in my genome?
- 20 Personal genomes: details of family genetics
- Appendix I Brief Unix reference
- Appendix II A selection of biological sequence analysis software
- Appendix III A short Perl reference
- Appendix IV A brief introduction to R
- Index
- References
Summary
My little silver Honda's front tires pulled us through the mountains. My hands felt the road and the turns. My mind drifted back into the lab. DNA chains coiled and floated. Lurid blue and pink images of electric molecules injected themselves somewhere between the mountain road and my eyes.
(Kary Mullis about his invention of PCR in Dancing Naked in the Mind Field; Mullis, 1998)In order to work with DNA in the laboratory we often need to produce that DNA in a larger quantity. In addition, a longer DNA molecule like a whole human chromosome is difficult to work with, and we rather want to focus on a smaller region of DNA. In a classic cloning experiment a smaller DNA fragment is introduced into a circular plasmid DNA, which is allowed to replicate within bacterial cells. Once the bacterial cells have grown to a certain density, these cells may be isolated by centrifugation and the plasmid DNA purified from the bacterial cells. This is a somewhat time-consuming procedure, but there is an alternative method in gene technology that is more convenient. Thus, our third example of gene technology is the polymerase chain reaction (PCR), invented by Kary Mullis in 1984 (Mullis et al., 1986).
What is PCR?
PCR is one of the most widely used techniques in DNA technology. As in traditional cloning it is a means to amplify a shorter region of DNA, i.e. to produce a distinct region of DNA in a large quantity. However, PCR is carried out in a simple test tube reaction where DNA is amplified with the help of the enzyme DNA polymerase. Another technical advantage of PCR compared to conventional cloning in some bacterial host is that the DNA product is relatively pure.
- Type
- Chapter
- Information
- Genomics and BioinformaticsAn Introduction to Programming Tools for Life Scientists, pp. 44 - 54Publisher: Cambridge University PressPrint publication year: 2012