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4 - Gene technology: amplifying DNA

Published online by Cambridge University Press:  05 August 2012

Tore Samuelsson
Affiliation:
Göteborgs Universitet, Sweden
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Summary

My little silver Honda's front tires pulled us through the mountains. My hands felt the road and the turns. My mind drifted back into the lab. DNA chains coiled and floated. Lurid blue and pink images of electric molecules injected themselves somewhere between the mountain road and my eyes.

(Kary Mullis about his invention of PCR in Dancing Naked in the Mind Field; Mullis, 1998)

In order to work with DNA in the laboratory we often need to produce that DNA in a larger quantity. In addition, a longer DNA molecule like a whole human chromosome is difficult to work with, and we rather want to focus on a smaller region of DNA. In a classic cloning experiment a smaller DNA fragment is introduced into a circular plasmid DNA, which is allowed to replicate within bacterial cells. Once the bacterial cells have grown to a certain density, these cells may be isolated by centrifugation and the plasmid DNA purified from the bacterial cells. This is a somewhat time-consuming procedure, but there is an alternative method in gene technology that is more convenient. Thus, our third example of gene technology is the polymerase chain reaction (PCR), invented by Kary Mullis in 1984 (Mullis et al., 1986).

What is PCR?

PCR is one of the most widely used techniques in DNA technology. As in traditional cloning it is a means to amplify a shorter region of DNA, i.e. to produce a distinct region of DNA in a large quantity. However, PCR is carried out in a simple test tube reaction where DNA is amplified with the help of the enzyme DNA polymerase. Another technical advantage of PCR compared to conventional cloning in some bacterial host is that the DNA product is relatively pure.

Type
Chapter
Information
Genomics and Bioinformatics
An Introduction to Programming Tools for Life Scientists
, pp. 44 - 54
Publisher: Cambridge University Press
Print publication year: 2012

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References

Green, R. E. Krause, J. Briggs, A. W. 2010 A draft sequence of the Neandertal genome Science 328 71 CrossRefGoogle ScholarPubMed
Green, R. E. Malaspinas, A. S. Krause, J. 2008 A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing Cell 134 41 CrossRefGoogle ScholarPubMed
Miller, W. Drautz, D. I. Janecka, J. E. 2009 The mitochondrial genome sequence of the Tasmanian tiger () Genome Res 19 21 Google Scholar
Miller, W. Drautz, D. I. Ratan, A. 2008 Sequencing the nuclear genome of the extinct woolly mammoth Nature 456 38 CrossRefGoogle ScholarPubMed
Mullis, K. 1998 Dancing Naked in the Mind Field New York Pantheon Books Google Scholar
Mullis, K. Faloona, F. Scharf, S. 1986 Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction Cold Spring Harb Symp Quant Biol 51 26 CrossRefGoogle ScholarPubMed

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