Several studies have been carried out during the last fifteen years on reproduction, population dynamics and diet of the Antarctic shag, Phalacrocorax bransfieldensis Murphy, at different localities in the South Shetland Islands (reviewed in Casaux & Barrera-Oro 2006). In both the colonies studied and in other colonies counted we observed that the number of breeding pairs was steadily decreasing (Casaux & Barrera-Oro 2006). Casaux & Baroni (2002) had earlier suggested that such a decreasing trend might be related, at least partially, to a marked decrease in the inshore populations of two fish prey species, the marbled notothen Notothenia rossii Richardson and the humphead notothen Gobionotothen gibberifrons Lönnberg (Barrera-Oro et al. 2000), which had been studied over a period of 19 years in coastal waters of the South Shetland Islands. Exactly how a reduction in prey availability affects the shag populations (e.g. migration of breeders to other colonies in the area or to new breeding areas, a decrease in the rate of recruitment, an increase in adult mortality, variation in the age at first breeding, etc) is not clear. To investigate this, we started a banding programme at Nelson Island, South Shetland Islands. We postulated that the processes might operate with different intensities on individuals of different sexes, so all individuals in each population studied needed to be sexed. This posed problems for chicks which have monomorphic plumage and no differences in vocalisations (Casaux & Baroni 2000), so that the normal methods for sexing in the field would not work. As most of the external morphological characters in the chicks of Antarctic shags have stabilized by 45–50 days old (Casaux 1998), Casaux & Baroni (2000) had suggested that the use of discriminant functions originally developed for adults could be an appropriate method to sex chicks more than 50 days old.