Hostname: page-component-cd9895bd7-fscjk Total loading time: 0 Render date: 2024-12-26T12:22:54.530Z Has data issue: false hasContentIssue false
  • English
  • Français

Adenine, adenosine, ribose and 5′-AMP adsorption to allophane

Published online by Cambridge University Press:  01 January 2024

Hideo Hashizume  and
Benny K. G. Theng
Hideo Hashizume*
Affiliation:
National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan
Benny K. G. Theng
Affiliation:
Landcare Research, Private Bag 11052, Palmerston North 4442, New Zealand
*
*E-mail address of corresponding author: Hashizume.Hideo@nims.go.jp
Rights & Permissions [Opens in a new window]

Abstract

Core share and HTML view are not available for this content. However, as you have access to this content, a full PDF is available via the ‘Save PDF’ action button.

We have investigated the adsorption of adenine, adenosine, ribose, and adenosine-5′-phosphate (5′-AMP) by allophane at pH 4, 6 and 8. Adenine, adenosine and ribose gave similar isotherms, i.e. adsorption increased regularly with solution concentration and decreased in the order: pH 8 > pH 6 > pH 4. Allophane had a greater affinity for 5′-AMP than for adenine, adenosine or ribose. Further, the extent of adsorption for 5′-AMP increased in the order: pH 8 ≪ pH 6 ≈ pH 4. The adsorption of 5′-AMP at pH 4 and pH 6 was about 60 times greater than at pH 8. The strong adsorption of 5′-AMP accords with the well known high phosphate-retention capacity of allophane and allophane-rich soils. The experimental data may be rationalized in terms of the pH-dependent charge characteristics of the organic solutes and allophane. The large propensity of allophane to retain 5′-AMP is ascribed to ligand exchange between the phosphate of 5′-AMP and the hydroxyl of (HO)Al(OH2) groups, exposed at perforations on the wall of allophane spherules, giving rise to a surface (chelation) complex. The high affinity of nucleotides for allophane has implications for the possible role of allophane in the abiotic formation of RNA-type polynucleotides although nucleotide ‘immobilization’ by surface complexation might hinder RNA oligomerization.

Keywords

AdenineAdenosineAllophane5′-AMPAdsorptionRibose
Type
Research Article
Information
Clays and Clay Minerals , Volume 55 , Issue 6 , December 2007 , pp. 599 - 605
Copyright
Copyright © 2007, The Clay Minerals Society

References

Adams, J.M. McCabe, R.W., Bergaya, F. Theng, B.K.G. and Lagaly, G., (2006) Clay minerals as catalysts Handbook of Clay Science Amsterdam Elsevier 541–581 10.1016/S1572-4352(05)01017-2.CrossRefGoogle Scholar
Banin, A. Lawless, J.G. Mazzurco, J. Church, F.M. Margulies, L. and Urenberg, J.B., (1985) pH profile of the adsorption of nucleotides onto montmorillonite II. Adsorption and desorption of 5′-AMP in iron-calcium montmorillonite systems Origins of Life 15 89–101.Google ScholarPubMed
Bernai, J.D. and Fox, S.W., (1965) Molecular matrices for living systems Proceedings of the 2nd International Symposium on the Origin of Life on Earth Florida, USA Wakulla Springs 65–88.Google Scholar
Brack, A., Bergaya, F. Theng, B.K.G. and Lagaly, G., (2006) Clay minerals and the origin of life Handbook of Clay Science Amsterdam Elsevier 379–391 10.1016/S1572-4352(05)01011-1.CrossRefGoogle Scholar
Brigatti, M.F. Galán, E. Theng, B.K.G., Bergaya, F. Theng, B.K.G. and Lagaly, G., (2006) Structures and mineralogy of clay minerals Handbook of Clay Science Amsterdam Elsevier 19–86 10.1016/S1572-4352(05)01002-0.CrossRefGoogle Scholar
Cairns-Smith, A.G. and Hartman, H., (1986) Clay Minerals and the Origin of Life Cambridge, UK Cambridge University Press.Google Scholar
Ertem, G. and Ferris, J.P., (1996) Synthesis of RNA oligomers on heterogeneous templates Nature 379 238–240 10.1038/379238a0.CrossRefGoogle ScholarPubMed
FAO/ISRIC/ISSS, World Reference Base for Soil Resources (1998) Rome FAO.Google Scholar
Ferris, J.P., (2005) Mineral catalysis and prebiotic synthesis: Montmorillonite-catalyzed formation of RNA Elements 1 145–149 10.2113/gselements.1.3.145.CrossRefGoogle Scholar
Ferris, J.P. and Ertem, G., (1992) Oligomerization reactions of ribonucleotides: the reaction of the 5′-phosphorimidazolide of nucleosides on montmorillonite and other minerals Origins of Life and Evolution of the Biosphere 22 369–381 10.1007/BF01809373.CrossRefGoogle Scholar
Ferris, J.P. and Ertem, G., (1993) Montmorillonite catalysis of RNA oligomer formation in aqueous solution: A model for the prebiotic formation of RNA Journal of the American Chemical Society 115 12270–12275 10.1021/ja00079a006.CrossRefGoogle Scholar
Ferris, J.P. and Ertem, G., (1993) Oligomerization reactions of ribonucleotides: the reaction of the 5′-phosphorimidazolide of adenosine with diadenosine pyrophosphate on montmorillonite and other minerals Origins of Life and Evolution of the Biosphere 23 229–241 10.1007/BF01581901.CrossRefGoogle Scholar
Ferris, J.P. Ertem, G. and Agarwal, V., (1989) Mineral catalysis of the formation of dimers of 5′-AMP in aqueous solution: The possible role of montmorillonite clays in the prebiotic synthesis of RNA Origins of Life and Evolution of the Biosphere 19 165–178 10.1007/BF01808150.CrossRefGoogle ScholarPubMed
Franchi, M. Ferris, J. and Gallori, E., (2003) Cations as mediators of the adsorption of nucleic acids on clay surfaces in prebiotic environments Origins of Life and Evolution of the Biosphere 33 1–16 10.1023/A:1023982008714.CrossRefGoogle ScholarPubMed
Gilbert, W., (1986) The RNA world Nature 319 618 10.1038/319618a0.CrossRefGoogle Scholar
Graf, G. and Lagaly, G., (1980) Interaction of clay minerals with adenosine-5′-phosphates Clays and Clay Minerals 28 12–18 10.1346/CCMN.1980.0280102.CrossRefGoogle Scholar
Hall, P.L. Churchman, G.J. and Theng, B.K.G., (1985) Size distribution of allophane unit particles in aqueous suspensions Clays and Clay Minerals 33 345–349 10.1346/CCMN.1985.0330411.CrossRefGoogle Scholar
Harsh, J. and Sumner, M.E., (2000) Poorly crystalline aluminosilicate clays Handbook of Soil Science Boca Raton, Florida, USA CRC Press.Google Scholar
Hashizume, H. and Theng, B.K.G., (1999) Adsorption of DL-alanine by allophane: effect of pH and unit particle aggregation Clay Minerals 34 233–238 10.1180/000985599546190.CrossRefGoogle Scholar
Hashizume, H. Theng, B.K.G. and Yamagishi, A., (2002) Adsorption and discrimination of alanine and alanyl-alanine enantiomers by allophane Clay Minerals 37 551–557 10.1180/0009855023730051.CrossRefGoogle Scholar
Hiradate, S., (2005) Structural changes of allophane during purification procedures as determined by solid-state 27A1 and 29Si NMR Clays and Clay Minerals 53 653–658 10.1346/CCMN.2005.0530611.CrossRefGoogle Scholar
Julg, A. (1990) Asymmetrical adsorption on kaolinite and origin of the L-homochirality of the amino acids in the proteins of living organisms. Pp. 25–34 in: Proceedings of the 9thInternational Clay Conference, Strasbourg, 1989. (Farmer, V.C. and Tardy, Y., editors). Sciences Géologiques Mémoire 85.Google Scholar
Khan, H. Matsue, N. and Henmi, T., (2006) Adsorption of water on nano-ball allophane as affected by heat treatment Clay Science 13 43–50.Google Scholar
Lailach, G.E. Thompson, T.D. and Brindley, G.W., (1968) Adsorption of pyrimidines, purines, and nucleosides by Li-, Na-, Mg-, and Ca-montmorillonite (Clay-organic studies XII) Clays and Clay Minerals 16 285–293 10.1346/CCMN.1968.0160405.CrossRefGoogle Scholar
Laszlo, P., (1987) Preparative Chemistry using Supported Reagents New York Academic Press.Google Scholar
Lawless, J.G. Banin, A. Church, F.M. Mazzurco, J. Huff, R. Kao, J. Cook, A. Lowe, T. Urenberg, J.B. and Edelson, E., (1985) pH profile of the adsorption of nucleotides onto montmorillonite I. Selected homoionic clays Origins of Life 15 77–88.Google ScholarPubMed
Matsue, N. and Henmi, T., (1993) Molecular orbital study on the relationship between Si/Al ratio and surface acid strength of allophane Journal of the Clay Science Society of Japan 33 102–106 (in Japanese).Google Scholar
McBride, M.B. and Sumner, M.E., (2000) Chemisorption and precipitation reactions Handbook of Soil Science Boca Raton, Florida, USA CRC Press.Google Scholar
Parfitt, R.L., (1990) Allophane in New Zealand — A review Australian Journal of Soil Research 28 343–360 10.1071/SR9900343.CrossRefGoogle Scholar
Parfitt, R.L. and Kimble, J.M., (1989) Condition for formation of allophane in soils Soil Science Society of America Journal 53 971–977 10.2136/sssaj1989.03615995005300030057x.CrossRefGoogle Scholar
Rajan, S.S.S., (1975) Mechanism of phosphate adsorption by allophane clays New Zealand Journal of Science 18 93–101.Google Scholar
Rishpon, J. O’Hara, P.J. Lahav, N. and Lawless, J.G., (1982) Interaction between ATP, metal ions, glycine, and several minerals Journal of Molecular Evolution 18 179–184 10.1007/BF01733044.CrossRefGoogle ScholarPubMed
Theng, B.K.G., (1974) The Chemistry of Clay-Organic Reactions London Adam Hilger.Google Scholar
Theng, B.K.G., van Olphen, H. and Veniale, F., (1982) Clay-activated organic reactions Proceedings of International Clay Conference, Bologna-Pavia, 1981 Amsterdam Elsevier 197–238.Google Scholar
Theng, B.K.G. Russell, M. Churchman, G.J. and Parfitt, R.L., (1982) Surface properties of allophane, halloysite, and imogolite Clays and Clay Minerals 30 143–149 10.1346/CCMN.1982.0300209.CrossRefGoogle Scholar
Wada, K., Dixon, J.B. and Weed, S.B., (1977) Allophane and imogolite Minerals in Soil Environments Madison, Wisconsin, USA Soil Science Society of America 603–638.Google Scholar
Wada, K., (1986) Ando Soils in Japan Fukuoka, Japan Kyushu University Press.Google Scholar
Wada, S.-I., (1993) Allophane and imogolite Jinkou Nendo 20 2–29 (in Japanese).Google Scholar
Wada, S.-I. and Wada, K., (1977) Density and structure of allophane Clay Minerals 12 289–298 10.1180/claymin.1977.012.4.02.CrossRefGoogle Scholar
Winter, D. and Zubay, G., (1995) Binding of adenine and adenosine-related compounds to the clay montmorillonite and the mineral hydroxyapatite Origins of Life and Evolution of the Biosphere 25 61–81 10.1007/BF01581574.CrossRefGoogle Scholar
Zaug, A.J. and Cech, T.R., (1986) The intervening sequence RNA of Tetrahymena is an enzyme Science 231 470–475 10.1126/science.3941911.CrossRefGoogle ScholarPubMed