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Codon usage as a reason for unsuccessful search for amber-suppressor mutants in Streptomyces lividans?

Published online by Cambridge University Press:  14 April 2009

Horst Schmieger*
Affiliation:
Institut für Genetik und Mikrobiologie, Lehrstuhl Genetik, Maria-Ward-Str. la, D-8000 München 19, FRG
Ralph Knerr
Affiliation:
Institut für Genetik und Mikrobiologie, Lehrstuhl Genetik, Maria-Ward-Str. la, D-8000 München 19, FRG
Maria Köberlein
Affiliation:
Institut für Genetik und Mikrobiologie, Lehrstuhl Genetik, Maria-Ward-Str. la, D-8000 München 19, FRG
*
* Corresponding author
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Summary

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An amber mutation was created in the CAT gene of plasmid vector pACYC184 and this modified plasmid was fused with the Streptomyces vector pIJ702 for use as an indicator for the identification of Streptomyces strains carrying nonsense suppressor tRNA mutations. The resulting hybrid plasmid pGM1109 was introduced into the chloramphenicol-sensitive mutant M252 of Streptomyces lividans. Chloramphenicol-resistant colonies were isolated and characterized. None of them was a nonsense suppressor mutant. The failure to obtain such mutants is discussed on the basis of codon usage in streptomycetes.

Type
Research Article
Copyright
Copyright © Cambridge University Press 1988

References

Agarana, C. E., Kuntz, I. D., Birken, S., Axel, R. & Cantor, R. S. (1986). Molecular cloning and nucleotide sequence of the streptavidin gene. Nucleic Acids Research 14, 18711882.CrossRefGoogle Scholar
Bernan, V., Filopulos, D., Herber, W., Bibb, M. & Katz, E. (1985). The nucleotide sequence of the tyrosinase gene from Streptomyces antibioticus and characterization of the gene product. Gene 37, 101110.CrossRefGoogle ScholarPubMed
Bibb, M. J. & Cohen, S. N. (1982). Gene expression in Streptomyces: Construction and application of promoter-probe plasmid vectors in Streptomyces lividans. Molecular and General Genetics 187, 265–227.CrossRefGoogle ScholarPubMed
Bibb, M. J., Bibb, M. J., Ward, J. M. & Cohen, S. N. (1985). Nucleotide sequences encoding and promoting expressions of three antibiotic resistance genes indigenous to Streptomyces. Molecular and General Genetics 199, 2636.CrossRefGoogle ScholarPubMed
Chang, A. C. Y. & Cohen, S. N. (1978). Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. Journal of Bacteriology 134, 11411156.CrossRefGoogle ScholarPubMed
Crick, F. H. C. (1966). Codon–anticodon pairing: The wobble hypothesis. Journal of Molecular Biology 19, 548555.CrossRefGoogle ScholarPubMed
Enquist, L. W. & Bradley, S. G. (1971). Characterization of deoxyribonucleic acid from Streptomyces venezuelae species. Development in Industrial Microbiology 12, 225236.Google Scholar
Garen, A. (1968). Sense and nonsense in the genetic code. Science 160, 149159.CrossRefGoogle ScholarPubMed
Hopwood, D. A., Bibb, M. J., Chater, K. F., Kieser, T., Bruton, C. J., Kieser, H. M., Lydiate, D. J., Smith, C. P., Ward, J. M. & Schrempf, H. (1985). Genetic manipulation of Streptomyces. A Laboratory Manual. The John Innes Foundation, Norwich, England.Google Scholar
Horinouchi, S., Sujuki, H. & Beppu, T. (1986). Nucleotide sequence of afsB, a pleiotropic gene involved in secondary metabolism in Streptomyces coelicolor A3(2) and Streptomyces lividans. Journal of Bacteriology 168, 257269.CrossRefGoogle ScholarPubMed
Hoshiko, S., Makabe, O., Nojini, C., Katsumata, K., Satoh, E., Nagaoka, K. (1987). Molecular cloning and characterization of the Streptomyces hygroscopicus α-amylase gene. Journal of Bacteriology 169, 10291036.CrossRefGoogle ScholarPubMed
Huber, M., Hintermann, G. & Lerch, K. (1985). Primary structure of tyrosinase from Streptomyces glaucescens. Biochemistry 24, 60386044.CrossRefGoogle ScholarPubMed
Ikemura, T. (1981). Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system. Journal of Molecular Biology 151, 389409.CrossRefGoogle Scholar
Ish-Horowicz, D. & Burke, J. F. (1981). Rapid and efficient cosmid cloning. Nucleic Acids Research 9, 29892998.CrossRefGoogle ScholarPubMed
Katz, E., Thompson, C. J. & Hopwood, D. A. (1983). Cloning and expression of the tyrosinase gene from Streptomyces antibioticus in Streptomyces lividans. Journal of General Microbiology 129, 27032714.Google ScholarPubMed
Kieser, T. (1984). Factors affecting the isolation of cccDNA from Streptomyces lividans and Escherichia coli. Plasmid 12, 1936.CrossRefGoogle Scholar
Lederberg, E. M. & Cohen, S. N. (1974). Transformation of Salmonella typhimurium by plasmid deoxyribonucleic acid. Journal of Bacteriology 119, 10721074.CrossRefGoogle ScholarPubMed
Lomovskaya, N. D., Chater, K. F. & Mkrtumian, N. M. (1980). Genetics and molecular biology of Streptomyces bacteriophages. Microbiological Reviews 44, 206229.CrossRefGoogle ScholarPubMed
Maruyama, T., Gojobor, T., Aota, S. & Ikemura, T. (1986). Codon usage tabulated from the GenBank genetic sequence data. Nucleic Acids Research 14 (Supplement), r151r197.CrossRefGoogle ScholarPubMed
Paradiso, M. J., Roberts, G., Streicher, S. L. & Goldberg, R. B. (1987). Characterization of suppressible mutations in the viomycin phosphotransferase gene of the Streptomyces enteric plasmid pVE138. Journal of Bacteriology 169, 13251327.CrossRefGoogle ScholarPubMed
Robbins, P. W., Trimble, R. B., Wirth, D. F., Hering, C., Maley, F., Maley, G. F., Das, R., Gibson, B. W., Royal, N. & Biemann, K. (1984). Primary structure of the Streptomyces enzyme endo-beta-N-acetylglucosamidase H. Journal of Biological Chemistry 259, 75777583.CrossRefGoogle Scholar
Tessman, I. (1968). Mutagenic treatment of double- and single-stranded DNA phages T4 and S13 with hydroxyl-amine. Virology 35, 330333.CrossRefGoogle Scholar
Thompson, C. J., Ward, J. M. & Hopwood, D. A. (1982). Cloning of antibiotic resistance and nutritional genes in streptomycetes. Journal of Bacteriology 151, 668677.CrossRefGoogle ScholarPubMed
Thompson, C. J. & Gray, G. S. (1983). Nucleotide sequence of a Streptomycete aminoglycoside phosphotransferase gene and its relationship to phosphotransferases encoded by resistance plasmids. Proceedings of the National Academy of Sciences, U.S.A. 80, 51905194.CrossRefGoogle ScholarPubMed
Uchiyama, H. & Weisblum, B. (1985). N-methyl transferase of Streptomyces erythraeus that confers resistance to the macrolide-licosamide-streptogramin B antibiotics: Amino acid sequence and its homology to cognate R-factor enzymes from pathogenic bacilli and cocci. Gene 38, 103110.CrossRefGoogle Scholar
Zalacain, M., Gonzalez, A., Guerrero, M. C., Mattaliano, R. J., Malpartida, F. & Jimenez, A. (1986). Nucleotide sequence of the hygromycin B phosphotransferase gene from Streptomyces hygroscopicus. Nucleic Acids Research 14, 15651581.CrossRefGoogle ScholarPubMed