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Crystal structure of palbociclib form A, C24H29N7O2

Published online by Cambridge University Press:  20 December 2024

Petr Buikin
Affiliation:
A. N. Nesmeyanov Institute of Organoelement Compounds RAS, Vavilova str. 28, Moscow 119334, Russia Institute of General and Inorganic Chemistry RAS, Leninsky Prosp. 31, Moscow 119991, Russia
Alexander Korlyukov
Affiliation:
A. N. Nesmeyanov Institute of Organoelement Compounds RAS, Vavilova str. 28, Moscow 119334, Russia
Ivan Ushakov
Affiliation:
A. N. Nesmeyanov Institute of Organoelement Compounds RAS, Vavilova str. 28, Moscow 119334, Russia
Alexander Goloveshkin
Affiliation:
A. N. Nesmeyanov Institute of Organoelement Compounds RAS, Vavilova str. 28, Moscow 119334, Russia
Elizaveta Kulikova
Affiliation:
Kurchatov Institute, National Research Center, Pl. Akad. Kurchatova 1, Moscow 123182, Russia
Anna Vologzhanina*
Affiliation:
A. N. Nesmeyanov Institute of Organoelement Compounds RAS, Vavilova str. 28, Moscow 119334, Russia
*
a)Author to whom correspondence should be addressed. Electronic mail: ann.vologzhanina@gmail.com

Abstract

The crystal structure of palbociclib (C24H29N7O2) used as a medication for the treatment of breast cancer has been solved and refined using synchrotron radiation after density functional theory optimization. Palbociclib crystallizes in the monoclinic system (space group P21/c, #14) at room temperature with crystal parameters: a = 11.3133(2), b = 5.62626(9), c = 35.9299(9) Å, β = 101.5071(12), V = 2241.03(8) Å3, and Z = 4. The crystal structure contains infinite N–H⋯N bonded layers. The powder pattern has been submitted to ICDD for inclusion in the Powder Diffraction File™ (PDF®).

Type
New Diffraction Data
Copyright
Copyright © The Author(s), 2024. Published by Cambridge University Press on behalf of International Centre for Diffraction Data

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Deceased

References

REFERENCES

Allu, S., An, J.-H., Park, B. J., and Kim, W.-S.. 2024. “Improving Dissolution Rate and Solubility of Palbociclib Salts/Cocrystal for Anticancer Efficacy.” Journal of Molecular Structure 1305 (6): 137756. doi:10.1016/j.molstruc.2024.137756.CrossRefGoogle Scholar
Baburin, I. A., and Blatov, V. A.. 2004. “Sizes of Molecules in Organic Crystals: The Voronoi–Dirichlet Approach.” Acta Crystallographica Section B: Structural Science 60 (4): 447–52. doi:10.1107/S0108768104012698.CrossRefGoogle ScholarPubMed
Blatov, V. A., Shevchenko, A. P., and Proserpio, D. M.. 2014. “Applied Topological Analysis of Crystal Structures with the Program Package ToposPro.” Crystal Growth & Design 14 (7): 3576–86. doi:10.1021/cg500498k.CrossRefGoogle Scholar
Blöchl, P. E. 1994. “Projector Augmented-Wave Method.” Physical Review B 50 (24): 17953–79. doi:10.1103/PhysRevB.50.17953.CrossRefGoogle ScholarPubMed
“Bruker TOPAS 5 User Manual”. 2014. Karlsruhe, Germany: Bruker AXS GmbH.Google Scholar
Buikin, P. A., Vologzhanina, A. V., Novikov, R. A., and Korlyukov, A. A.. 2024a. “9-Ethyl-6,6-Dimethyl-8-[4-(Morpholin-4-Yl)Piperidin-1-Yl]-11-Oxo-6,11-Dihydro-5H-Benzo[b]Carbazole-3-Carbonitrile Hydrochloride.” Molbank 2024 (1): M1759. doi:10.3390/M1759.CrossRefGoogle Scholar
Buikin, P., Korlyukov, A., Kulikova, E., Novikov, R., and Vologzhanina, A.. 2024b. “Crystal Structure of Rilpivirine Hydrochloride, N6H19C22Cl.” Powder Diffraction 39 (3): 151–8. doi:10.1017/S0885715624000228.CrossRefGoogle Scholar
Coelho, A. A. 2003. “Indexing of Powder Diffraction Patterns by Iterative Use of Singular Value Decomposition.” Journal of Applied Crystallography 36 (1): 8695. doi:10.1107/S0021889802019878.CrossRefGoogle Scholar
Fan, H., Guo, X., Huang, L., and Gu, H.. 2019. “Preparation Methods for Palbociclib Free Base Crystal Form A and Crystal Form B.” United States Patent US10329290B2. https://patents.google.com/patent/US10329290B2/en?oq=US10329290B2.Google Scholar
Fan, H., Guo, X., Huang, L., and Gu, H.. 2020. “Preparation Methods for Palbociclib Free Base Crystal Form A and Crystal Form B.” United States Patent US10766895B2. https://patents.google.com/patent/US10766895B2/en?oq=US10766895B2.Google Scholar
Finn, R. S., Dering, H., Conklin, D., Kalous, O., Cohen, D. J., Desai, A. J., Ginther, C., Atefi, M., Chen, I., Fowst, C., Los, G., and Slamon, D. J.. 2009. “PD 0332991, a Selective Cyclin D Kinase 4/6 Inhibitor, Preferentially Inhibits Proliferation of Luminal Estrogen Receptor-Positive Human Breast Cancer Cell Lines in Vitro.” Breast Cancer Research 11 (5): R77. doi:10.1186/bcr2419.CrossRefGoogle ScholarPubMed
Goloveshkin, A. S., Korlyukov, A. A., and Vologzhanina, A. V.. 2021. “Novel Polymorph of Favipiravir — An Antiviral Medication.” Pharmaceutics 13 (2): 139. doi:10.3390/pharmaceutics13020139.CrossRefGoogle ScholarPubMed
Goloveshkin, A. S., Kulikova, E. S., Novikov, R. A., Vologzhanina, A. V., and Korlyukov, A. A.. 2024. “Crystal Structure of Nilotinib Hydrochloride Monohydrate According to Powder X-Ray Diffraction Data.” Journal of Structural Chemistry 65 (3): 585–95. doi:10.1134/S0022476624030132.CrossRefGoogle Scholar
Ibrahim, F. M. L., Mullarney, M. P., Shanker, R. M., Spong, B. R., and Wang, J.. 2016. “Solid Dosage Forms of Palbociclib.” World Intellectual Property Organization Patent WO2016193860A1. https://patents.google.com/patent/WO2016193860A1/en?oq=WO2016193860A1Google Scholar
Joubert, D. 1999. “From Ultrasoft Pseudopotentials to the Projector Augmented-Wave Method.” Physical Review B - Condensed Matter and Materials Physics 59 (3): 1758–75. doi:10.1103/PhysRevB.59.1758.Google Scholar
Katiyar, D., Ahamad, S., Dash, S. G., Tripathi, S., Arora, A., and Thakur, T. S.. 2021. “Understanding the Guest Binding in the Cucurbit[7]Uril Inclusion Complexes of CDK4/6 Inhibitors, Palbociclib, and Ribociclib from a Combined Experimental and Computational Study.” Journal of Molecular Structure 1241 (10): 130637. doi:10.1016/j.molstruc.2021.130637.CrossRefGoogle Scholar
Kresse, G., and Furthmüller, J.. 1996a. “Efficiency of Ab-Initio Total Energy Calculations for Metals and Semiconductors Using a Plane-Wave Basis Set.” Computational Materials Science 6 (1): 1550. doi:10.1016/0927-0256(96)00008-0.CrossRefGoogle Scholar
Kresse, G., and Furthmüller, J.. 1996b. “Efficient Iterative Schemes for Ab Initio Total-Energy Calculations Using a Plane-Wave Basis Set.” Physical Review B - Condensed Matter and Materials Physics 54 (16): 11169–86. doi:10.1103/PhysRevB.54.11169.CrossRefGoogle ScholarPubMed
Kresse, G., and Hafner, J.. 1993. “Ab Initio Molecular Dynamics for Liquid Metals.” Physical Review B 47 (1): 558–61. doi:10.1103/PhysRevB.47.558.CrossRefGoogle ScholarPubMed
Kresse, G., and Hafner, J.. 1994. “Ab Initio Molecular-Dynamics Simulation of the Liquid-Metal–Amorphous-Semiconductor Transition in Germanium.” Physical Review B 49 (20): 14251–69. doi:10.1103/PhysRevB.49.14251.CrossRefGoogle ScholarPubMed
Kresse, G., and Hafner, J.. 2000. “First-Principles Study of the Adsorption of Atomic H on Ni (111), (100) and (110).” Surface Science 459 (3): 287302. doi:10.1016/S0039-6028(00)00457-X.CrossRefGoogle Scholar
Kresse, G., and Joubert, D.. 1999. “From Ultrasoft Pseudopotentials to the Projector Augmented-Wave Method.” Physical Review B 59 (3): 1758–75. doi:10.1103/PhysRevB.59.1758.CrossRefGoogle Scholar
Macrae, C. F., Sovago, I., Cottrell, S. J., Galek, P. T. A., McCabe, P., Pidcock, E., Platings, M., Shields, G. P., Stevens, J. S., Towler, M., and Wood, P. A.. 2020. “Mercury 4.0: From Visualization to Analysis, Design and Prediction.” Journal of Applied Crystallography 53 (1): 226–35. doi:10.1107/S1600576719014092.CrossRefGoogle ScholarPubMed
Momma, K., and Izumi, F.. 2011. “VESTA 3 for Three-Dimensional Visualization of Crystal, Volumetric and Morphology Data.” Journal of Applied Crystallography 44 (6): 1272–76. doi:10.1107/S0021889811038970.CrossRefGoogle Scholar
Morris, M. C., McMurdie, H. F., Evans, E. H., Paretzkin, B., Parker, H. S., Pyrros, H. S., and Hubbard, C. R.. 1984. “Standard X-Ray Diffraction Powder Patterns: Section 20 - Data for 71 Substances.” Gaithersburg, MD: National Institute of Standards and Technology. doi:10.6028/NBS.MONO.25-20.CrossRefGoogle Scholar
O'Boyle, N. M., Banck, M., James, C. A., Morley, C., Vandermeersch, T., and Hutchison, G. R.. 2011. “Open Babel: An Open Chemical Toolbox.” Journal of Cheminformatics 3 (1): 33. doi:10.1186/1758-2946-3-33.CrossRefGoogle ScholarPubMed
Perdew, J. P., Kurth, S., Zupan, A., and Blaha, P.. 1999. “Accurate Density Functional with Correct Formal Properties: A Step Beyond the Generalized Gradient Approximation.” Physical Review Letters 82 (12): 2544–47. doi:10.1103/PhysRevLett.82.2544.CrossRefGoogle Scholar
Prokaeva, M. A., Baburin, I. A., and Serezhkin, V. N.. 2009. “On Methods to Determine the Surface Areas of Molecules.” Journal of Structural Chemistry 50 (5): 867–72. doi:10.1007/s10947-009-0129-5.CrossRefGoogle Scholar
Rietveld, H. M. 1967. “Line Profiles of Neutron Powder-Diffraction Peaks for Structure Refinement.” Acta Crystallographica 22 (1): 151–52. doi:10.1107/S0365110X67000234.CrossRefGoogle Scholar
Rocca, A., Farolfi, A., Bravaccini, S., Schirone, A., and Amadori, D.. 2014. “Palbociclib (PD 0332991): Targeting the Cell Cycle Machinery in Breast Cancer.” Expert Opinion on Pharmacotherapy 15 (3): 407–20. doi:10.1517/14656566.2014.870555.CrossRefGoogle ScholarPubMed
Svetogorov, R. D. 2018. Dionis – Diffraction Open Integration Software. Moscow: National Research Center, Kurchatov Institute.Google Scholar
Svetogorov, R. D., Dorovatovskii, P. V., and Lazarenko, V. A.. 2020. “Belok/XSA Diffraction Beamline for Studying Crystalline Samples at Kurchatov Synchrotron Radiation Source.” Crystal Research and Technology 55 (5): 1900184. doi:10.1002/crat.201900184.CrossRefGoogle Scholar
van de Streek, J., and Neumann, M. A.. 2014. “Validation of Molecular Crystal Structures from Powder Diffraction Data with Dispersion-Corrected Density Functional Theory (DFT-D).Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials 70 (6): 1020–32. doi:10.1107/S2052520614022902.CrossRefGoogle ScholarPubMed
Zhou, H., Duan, C., Qin, H., Huang, C., Hou, J., Chen, Y., Zhu, J., Xu, C., Jin, J., and Zhuang, T.. 2023. “Synthesis and Structural Characterization of a Novel Palbociclib-Kaempferol Cocrystal with Improved Tabletability and Synergistic Antitumor Activity.” Journal of Molecular Structure 1281 (6): 135101. doi:10.1016/j.molstruc.2023.135101.CrossRefGoogle Scholar
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