Volume 49 - Issue 2 - April 2001
Editorial
My view
- Ray D. William, Alex Ogg, Carolyn Raab
-
- Published online by Cambridge University Press:
- 20 January 2017, p. 149
-
- Article
-
- You have access Access
- Export citation
Physiology, Chemistry, and Biochemistry
Seasonal changes in glucose, fructose, sucrose, and fructans in the roots of dandelion
- Robert G. Wilson, Stephen D. Kachman, Alex R. Martin
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 150-155
-
- Article
- Export citation
-
Roots of dandelion were exhumed from the soil monthly from 1997 to 1999 near Scottsbluff, NE, to assess the seasonal changes in total sugars, glucose, fructose, sucrose, and fructans. In the spring, the initiation of plant growth was accompanied by increased fructose and, to a lesser degree, glucose as a percentage of total sugars. During June, July, and August, the percentage of total sugars with a middle to high degree of polymerization (DP) fructans increased. The DP in fructans changed with reduced rainfall and was associated with increased fructose and decreased high-DP fructans as a percentage of total sugars. Decreasing or freezing soil temperatures in the fall were associated with increased fructose and decreased high-DP fructans as a percentage of total sugars. When soil froze in December, the percentage of total sugars as sucrose and low-DP fructans increased and mid- to high-DP fructans decreased. The seasonal fluctuations of glucose, fructose, sucrose, and various fructan polymers may be one mechanism that allows dandelion to adapt to environmental stresses and gain a competitive advantage over other plants in the community. An understanding of these seasonal fluctuations in sugars may also allow better timing of biological, mechanical, and chemical control practices for improved plant management.
Characterization of leaf surface, wax composition, and control of redvine and trumpetcreeper with glyphosate
- Demosthenis Chachalis, Krishna N. Reddy, C. Dennis Elmore
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 156-163
-
- Article
- Export citation
-
Laboratory and greenhouse studies were conducted on redvine and trumpetcreeper to characterize leaf surface and wax composition, determine responses of these weeds to glyphosate, characterize the nature of interactions between glyphosate and several selective postemergence herbicides (e.g., acifluorfen, bentazon, chlorimuron, imazaquin, and pyrithiobac) used in soybean and cotton, and determine the effects of various adjuvants on glyphosate activity on both species. Trumpetcreeper was consistently more susceptible to glyphosate than redvine. Glyphosate spray solution droplets had lower contact angle in trumpetcreeper than in redvine. Micro-roughness of the trumpetcreeper adaxial leaf surface was greater due to trichomes and glands compared to that of redvine, which had no trichomes or glands. Stomata or crystal wax deposition on the adaxial leaf surface were not observed in either species. The wax mass per unit area (22 to 37 µg cm−2) was similar regardless of the leaf age in both species. Epicuticular wax consisted of hydrocarbons, alcohols, acids, and triterpenes. Wax composition of young leaves of redvine was relatively hydrophilic (72% alcohols and acids, 24% hydrocarbons) compared to the hydrophobic components (23% alcohols and acids, 49% hydrocarbons) of old leaves. In contrast, wax of trumpetcreeper young leaves was relatively hydrophobic (9% alcohols and acids, 29% hydrocarbons), whereas old leaves had similar levels of hydrophilic and hydrophobic components (28% alcohols and acids, 31% hydrocarbons). Glyphosate mixed with selective postemergence herbicides were antagonistic when applied to redvine and trumpetcreeper, except acifluorfen. Various adjuvants did not increase glyphosate efficacy except ammonium sulfate, which increased glyphosate efficacy when applied alone to trumpetcreeper. These results showed that lower glyphosate efficacy was related to the more hydrophobic nature of redvine epicuticular waxes compared to that of trumpetcreeper.
Dicamba resistance in kochia
- Harwood J. Cranston, Anthony J. Kern, Josette L. Hackett, Erica K. Miller, Bruce D. Maxwell, William E. Dyer
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 164-170
-
- Article
- Export citation
-
Kochia plants resistant (R) to field rates of dicamba were characterized for their frequency of occurrence and levels of resistance and for the physiological fate of applied 14C-dicamba. Of 167 randomly sampled fields and seven fields identified by producers to contain R kochia, 19 contained plants that produced 1% or more R progeny. The maximum percentage of R progeny produced by parental plants from any field was 13%. An inbred R line derived from a field collection was 4.6-fold more resistant to dicamba than an inbred susceptible (S) line. Rates of 14C-dicamba uptake and translocation were similar in R and susceptible (S) plants up to 168 h after treatment (HAT). Concentrations of the primary metabolite, 5-hydroxy dicamba, were similar in R and S tissues up to 60 HAT, although amounts were significantly greater in R treated leaves by 96 and 168 HAT. However, because there were negligible levels of dicamba metabolites in R shoots and because the rate of metabolism was relatively slow, the observed changes were inadequate to account for observed resistance levels. Thus, dicamba resistance in kochia cannot be attributed to differential herbicide absorption, translocation, or metabolism. These findings, together with our field observations on the unusually slow spread of resistance within and among fields may indicate that dicamba resistance is a quantitative trait.
Weed Biology and Ecology
Giant sensitiveplant interference in cassava
- Bamidele S. Alabi, Albert O. Ayeni, Akinola A. Agboola, Bradley A. Majek
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 171-176
-
- Article
- Export citation
-
Giant sensitiveplant interference at different population densities in cassava established at 10,000 plants ha−1 was investigated on a Ferric Luvisol in a humid tropical environment. Interference for 12 mo was compared at 0, 10,000, 20,000, 30,000, and 40,000 plants ha−1 and at natural populations (averaging 630,000 plants ha−1) in four randomized complete blocks. Results showed that the order of cassava growth parameter response to giant sensitiveplant interference for 12 mo was leaf number > height > stem girth > leaf size = petiole length. The natural population density of giant sensitiveplant reduced growth faster and more than populations of 10,000 to 40,000 plants ha−1 in cassava. All giant sensitiveplant populations from 10,000 plants ha−1 and higher reduced storage root yield in cassava 12 mo after planting. Yield reduction increased as giant sensitiveplant population increased and the highest reduction of 85% occurred in the natural population of giant sensitiveplant.
Phenology of common lambsquarters growth parameters
- Jed Colquhoun, David E. Stoltenberg, Larry K. Binning, Chris M. Boerboom
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 177-183
-
- Article
- Export citation
-
Research was conducted to characterize the phenology of common lambsquarters growth parameters as influenced by climatic variation among years. Treatments included soybean or corn grown alone, common lambsquarters with soybean or corn, and common lambsquarters grown alone. Common lambsquarters leaf area and plant height phenology differed among years and was variable within treatments. Conversely, crop leaf area and plant height phenology did not differ among years and was less variable within a treatment than common lambsquarters. Weed relative leaf area and relative volume differed among years because of differences in crop and common lambsquarters leaf area and plant height phenology. Differences in common lambsquarters relative leaf area and relative volume among years may explain differences in previously reported crop yield responses to weed infestations between sites and years. Although common lambsquarters relative leaf area and relative volume differed among years, variability as indicated by regression coefficients of determination was also high within year and treatment. Crop leaf area and plant height phenology were well described by regression equations, with r2 values greater than 0.68. Therefore, low coefficients of determination for relative leaf area and relative volume models were attributed to variability in common lambsquarters within a treatment.
Tropic croton interference in cotton
- Shawn D. Askew, John W. Wilcut
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 184-189
-
- Article
- Export citation
-
Studies were conducted to determine the effect of interference between tropic croton (Croton glandulosus) and cotton (Gossypium hirsutum) on plant growth and productivity. Tropic croton height was not affected by weed density, but cotton height decreased with increased weed density 10 wk after planting. Tropic croton biomass per plant was not affected by weed density, but total weed biomass per meter of crop row increased with weed density. Cotton lint yield decreased linearly 2 kg ha−1 with each gram increase in weed dry biomass per meter of row. Percent yield loss–density relationship was described by the rectangular hyperbola model. Estimated coefficients A (maximum yield loss) and I (yield loss per unit density as density approaches zero) were 129.6 ± 42.2 and 35.6 ± 8.0%, respectively, when asymptotic iterations were based on least sums of squares. When A was constrained to 100% yield loss, I was 42.5 ± 5.1%. Results indicated that tropic croton was less competitive with cotton than many weeds but represents an economic threat to cotton growers.
Effect of Galerucella spp. feeding on seed production in purple loosestrife
- Elizabeth J. Stamm Katovich, David W. Ragsdale, Luke C. Skinner, Roger L. Becker
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 190-194
-
- Article
- Export citation
-
The effect of shoot feeding by the biocontrol agents, Galerucella calmariensis and Galerucella pusilla (Coleoptera: Chrysomelidae) on purple loosestrife (Lythrum salicaria) seed production and seed germination was quantified in two Minnesota wetlands. In a wet meadow where Galerucella spp. were present on isolated plants, feeding by adults and larvae during shoot elongation resulted in stunting and malformation of shoot tips. There was a subsequent reduction in purple loosestrife inflorescence length and number of flower buds and seed capsules. As Galerucella spp. larvae preferentially fed on shoot meristems, even low levels of feeding on a whole-plant basis (approximately 10% defoliation) reduced seed production. In a sedge meadow wetland with severe feeding damage (a minimum of 70% leaf defoliation), few to no flower buds formed on plants, and subsequently, few to no seed capsules were produced on purple loosestrife plants. Of the few capsules that were produced, number of seeds per capsule and percent germination of seeds did not differ from control plants. In both wetlands, feeding on a main shoot of purple loosestrife did not result in a compensatory increase in the number of axillary inflorescences. Feeding by Galerucella spp. and the subsequent reduction in number of seeds produced on purple loosestrife plants will decrease the number of seeds available for dissemination to new sites. Fewer seeds will enter the seedbank, and over time, feeding by Galerucella spp. will decrease the number of seeds available for seedling recruitment. The benefit of leaf defoliation on purple loosestrife plants caused by Galerucella spp. feeding has been reported. In this study, we have quantified the additional benefits of reduced seed production from Galerucella spp. feeding on purple loosestrife in North America.
Performance of INTERCOM for predicting corn–velvetleaf interference across north-central United States
- John L. Lindquist
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 195-201
-
- Article
- Export citation
-
Cost-effective weed management requires accurate estimates of yield and the potential yield loss resulting from weed infestations. However, crop yield and the effects of weeds are highly variable across years and locations. Ecophysiological models may be useful for predicting the effects of environment and management on crop and weed growth and competitive ability. Ability of the model INTERCOM to predict corn (Zea mays) growth and yield, velvetleaf (Abutilon theophrasti) interference on corn yield loss, and single-year economic threshold velvetleaf density (Te) was evaluated using 13 data sets collected in four states. Predicted and observed monoculture corn total aboveground biomass and leaf area index were in close agreement for most of the growing season. Predicted and observed weed-free corn yields were in agreement for yields ranging from 8 to 13 Mg ha−1 but were over- and underpredicted under low-yielding and near-optimal production conditions, respectively. Predicted and observed corn yield loss agreed well across the full range of observed velvetleaf densities for five to nine location years, depending on the performance criterion used. Estimates of Te calculated from predicted weed-free yield and yield loss relationships were an average of 6% smaller than those calculated from observed data, indicating that the model predicts a conservative value of Te in most cases. Although results are encouraging, they indicate that further research is needed to improve the capacity of INTERCOM for predicting weed-free yield and corn–velvetleaf interference.
Interference of Palmer amaranth in corn
- Rafael A. Massinga, Randall S. Currie, Michael J. Horak, John Boyer, Jr.
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 202-208
-
- Article
- Export citation
-
Palmer amaranth (Amaranthus palmeri) is a major weed in corn (Zea mays) fields in the southern Great Plains of the United States. Field studies were conducted in 1996, 1997, and 1998 near Garden City, KS, to evaluate the effects of Palmer amaranth density and time of emergence on grain yield of irrigated corn and on seed production of Palmer amaranth. Palmer amaranth was established at densities of 0.5, 1, 2, 4, and 8 plants m−1 of corn row both concurrently at corn planting and when corn was at the three- to six-leaf stage. The control plots were weed free. The Palmer amaranth planted with corn emerged with corn, whereas that planted later emerged at the four-, six-, and seven-leaf stages of corn. The Palmer amaranth emerging with corn reduced yield from 11 to 91% as density increased from 0.5 to 8 plants m−1 of row. In contrast, yield loss from Palmer amaranth emerging later than corn was observed only when the emergence occurred at the four- and six-leaf stages. The corn leaf area index (LAI) decreased as Palmer amaranth density increased. Reduction in corn LAI from Palmer amaranth interference was smaller for the second emergence date than for the first emergence date. Seed production per Palmer amaranth plant decreased with greater density, but seed per unit area increased from 140,000 to 514,000 seeds m−2 at densities of 0.5 and 8 plants m−1 of row, respectively, when Palmer amaranth emerged with corn and from 1,800 to 91,000 seeds m−2 at the same densities for later emergence dates. Although Palmer amaranth is highly competitive in corn, this study shows that yield loss is affected more by time of emergence than by density.
Interactions among weed, insect, and common rust treatments in sweet corn
- Lee R. Van Wychen, R. Gordon Harvey, John L. Wedberg
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 209-216
-
- Article
- Export citation
-
Treatment interactions affecting endemic populations of annual grass and broadleaf weeds, corn rootworm larvae (CRW), corn earworm (CEW), European corn borer (ECB), and common rust in sweet corn were investigated in three field studies near Arlington, WI, in 1996 and 1997. In all environments, weed biomass was affected only by the weed control treatments with cultivation resulting in the highest weed biomass. Corn root damage was affected only by the CRW insecticide treatments in the early- and late-planted environments in 1997 (E97 and L97). Both weed control and ear insect (CEW and ECB) control treatments affected corn ear damage by CEW and ECB. In E97 and L97, more insect ear damage occurred in plots with 1× herbicide treatments than in cultivation treatments. In L97, the ear insect treatment decreased ear damage 55% compared to untreated plots. The interaction between ear insect and weed control treatments affected the number of CEW found per 10 ears in L97. The interaction between hybrid rust and weed control treatments influenced common rust severity in all environments. A hybrid rust by CRW by ear insect treatment interaction also affected common rust severity in E97 and L97. ‘Jubilee’ hybrid (rust-susceptible) corn treated with both insecticides had greater common rust severity than nontreated Jubilee corn. Sweet corn yield was affected most by weed control in all environments, with the lowest yields occurring in cultivated plots. Sweet corn yield did not differ between the 1× and ⅓× herbicide treatments in all environments. The interaction among hybrid rust by CRW by ear insect treatments also affected yield in E97 and L97. An important component of this interaction was the CRW treatment, as sweet corn yield was higher in treated than nontreated plots. The interactions in this study indicate that the best chances for developing comprehensive thresholds for sweet corn pests in the Midwest are for CEW, ECB, and common rust.
Weed species–area relationships as influenced by tillage
- Dawit Mulugeta, David E. Stoltenberg, Chris M. Boerboom
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 217-223
-
- Article
- Export citation
-
The relationship between species richness and sample area has been characterized in many natural communities but has rarely been examined in crop–weed communities. We determined the species–area relationship in short-term (≤4 yr) and long-term (>15 yr) moldboard-plowed (MP), chisel-plowed (CP), and no-tillage (NT) fields cropped to corn and in short-term MP, CP, and NT fields cropped to soybean. A total of 10 corn fields and 10 soybean fields were sampled for species richness in 14 nested sample areas that ranged from 0.0625 to 512 m2. The influence of sample area on frequency of species occurrence was also determined. Species richness was greater in long-term NT fields than in tilled or short-term NT fields. The species–area relationship in tilled and short-term NT fields was best described by an exponential function. In contrast, a power function was the best fit for the species–area relationship in long-term NT fields. The functional minimum area required to represent 75% of the total weed species in tilled and short-term NT fields was 32 m2. A functional minimum area could not be determined in long-term NT fields because species richness continued to increase over the range of sample areas. Regression functions predicted that sample areas of 1 m2 would contain less than 50% of the observed maximum species richness in these fields. Sample areas of 36 m2 in tilled and short-term NT fields and 185 m2 in long-term NT fields were predicted to measure 75% of observed maximum species richness in these fields. Pigweed species and common lambsquarters occurred at high frequencies and were detected in most sample areas. This information could be used to better define sample area requirements and improve sampling procedures for species richness of weed communities.
Competition and fecundity of giant ragweed in corn
- S. Kent Harrison, Emilie E. Regnier, Jerron T. Schmoll, Jason E. Webb
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 224-229
-
- Article
- Export citation
-
A field study was conducted to determine the effects of giant ragweed emergence time and population density on corn grain yield, giant ragweed seed production, and giant ragweed predispersal seed losses. When weeds and crop emerged concurrently, hyperbolic regression of percent corn yield loss on giant ragweed population densities of 1.7, 6.9, and 13.8 weeds per 10 m2 gave a predicted loss rate of 13.6% for the first weed per 10 m2 in the linear response range at low densities and a maximum yield loss of 90% at high weed densities. Crop yield loss response to weed density was linear when giant ragweed emerged 4 wk after corn, and the regression coefficient indicated a yield loss rate of 1% per unit increase in weed density. A larger proportion of the variation in corn yield loss was explained by weed density (r2 = 0.99) than by weed biomass (r2 = 0.81). There was a positive linear relationship between giant ragweed seed production and weed density at each weed emergence time. When giant ragweed emerged with corn, regression equations for 1997 and 1998 gave a predicted seed rain of 146 and 238 seeds m−2 per unit increase in weed density, respectively. In both years when giant ragweed emerged 4 wk after corn, predicted seed rain was 16 seeds m−2 per unit increase in weed density. Viability of total giant ragweed seed was 56 and 38% in 1997 and 1998, respectively, and was not affected by weed emergence time or weed density. Feeding by insect larvae accounted for 13 to 19% of giant ragweed seed viability losses. Granivorous insects infesting giant ragweed seed were identified as a fruit fly (Diptera: Tephritidae), two weevils (Coleoptera: Curculionidae), and a moth (Lepidoptera: Gelechiidae).
Emergence and persistence of seed of velvetleaf, common waterhemp, woolly cupgrass, and giant foxtail
- Douglas D. Buhler, Robert G. Hartzler
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 230-235
-
- Article
- Export citation
-
Annual emergence and seed persistence of common waterhemp, velvetleaf, woolly cupgrass, and giant foxtail were characterized in central Iowa for 4 yr following burial of seeds collected and buried in autumn 1994. First-year emergence as a percentage of the original seed bank ranged from 5 to 40%, and the relative order was common waterhemp < velvetleaf < giant foxtail < woolly cupgrass. During the second and third years, there were no differences in percent emergence among species, with emergence percentages ranging from 1 to 9% of the original seed bank. During the fourth year, seedlings continued to emerge from only the velvetleaf and common waterhemp seed banks. A greater percentage of common waterhemp seed persisted each year and 12% of the original seed was recovered after 4 yr of burial. Five percent of the velvetleaf was recovered at the end of the fourth year. No woolly cupgrass and giant foxtail seed was recovered after the third and fourth years. The proportion of the seed that was accounted for from year to year through emergence and seed recovery varied by species and year. Total recovery of velvetleaf ranged from 61 to 87%, common waterhemp from 50 to 81%, woolly cupgrass from 29 to 79%, and giant foxtail from 23 to 79%. Based on the results of this research, velvetleaf and common waterhemp form more persistent seed banks than woolly cupgrass and giant foxtail. Therefore, woolly cupgrass and giant foxtail should be more amenable to management through seed bank depletion than velvetleaf and common waterhemp.
Weed Management
Managing the risks of herbicide resistance in wild oat
- Graeme Cavan, John Cussans, Stephen Moss
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 236-240
-
- Article
- Export citation
-
A single dominant mutation conferring resistance to aryloxyphenoxypropionate (AOPP) and cyclohexanedione (CHD) herbicides was incorporated into a quantitative model for the population development of wild oat. The model was used to predict the times required to develop field resistance in a number of different scenarios. Field resistance was defined as a threshold of four plants m−2 surviving herbicide treatment, and in most scenarios, a very large proportion of these plants were resistant. The model predicts that plow cultivation could delay the development of resistance relative to tine cultivation. With an initial seed bank of 100 seeds m−2 and annual use of AOPP/CHD herbicides, which kill 90% of susceptible but no resistant plants, field resistance develops in 15 yr with annual tine cultivation 10 cm deep but only after 23 yr with annual plowing 20 cm deep. The model predicts that herbicide rotation can dramatically increase the times required for field resistance to develop in a tine cultivation system. With annual use of AOPP/CHD herbicides, field resistance develops in 15 yr, whereas using alternative modes of action 1 in 2 yr delays field resistance to 28 yr. The model predicts that resistance can be delayed for at least 66 yr if three herbicides, each with a different mode of action, are rotated and each herbicide causes 90% mortality. The model predictions on the number of years required for field resistance to develop are not highly sensitive to the initial density of the seed bank (range modeled = 102 to 104), the mutation rate for resistance (10−4 to 10−7 per generation), the rate of outcrossing (0.1 to 100%) or the herbicide kill rate (80 to 95%).
Soil, Air, and Water
Influence of herbicides on growth and sclerotia production in Rhizoctonia solani
- R. Harikrishnan, X. B. Yang
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 241-247
-
- Article
- Export citation
-
This study was conducted to determine the effects of three commonly applied soybean (Glycine max) herbicides (glyphosate, imazethapyr, and pendimethalin) on the mycelial growth, sclerotial production, and viability of Rhizoctonia solani isolates [anastomosis groups AG-1, AG-2-2, and AG-4] under controlled conditions. Pendimethalin significantly reduced mycelial growth of all three R. solani isolates investigated, whereas effects of the herbicides imazethapyr and glyphosate were not significant. Sclerotial production was affected differently by the three herbicides. Isolates AG-1 and AG-2-2 produced sclerotia both in vitro and in vivo, whereas isolate AG-4 did not produce sclerotia in vitro. In vitro AG-1 isolate showed a decrease, and AG-2-2 isolate showed an increase in sclerotial production in the presence of herbicide. In contrast, both AG-1 and AG-2-2 isolates showed reduction in sclerotial production in vivo compared to AG-4 isolate, which showed an increase in sclerotial production in the presence of herbicides. Sclerotial production was generally higher in vivo than in vitro. The number of sclerotia produced per unit sclerotial weight was often higher in the presence of herbicides. Viability of sclerotia produced in the presence of herbicides was not significantly different from the no-herbicide control.
Symposium
Introduction to the effect of biotechnology and genomics on weed science
- Dale L. Shaner
-
- Published online by Cambridge University Press:
- 20 January 2017, p. 248
-
- Article
- Export citation
High throughput synthesis and screening: the partner of genomics for discovery of new chemicals for agriculture
- F. Dan Hess, Richard J. Anderson, Jeff D. Reagan
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 249-256
-
- Article
- Export citation
-
As new targets for herbicide action are identified from genomics research, large and diverse chemical collections and high-throughput assays will be required to maximize the probability of identifying compounds with activity at these targets. The new technology of combinatorial synthesis and high-throughput, miniaturized, in vitro screening, which has become an integral part of pharmaceutical discovery, is now being applied to discover new herbicides, insecticides, and fungicides. Depending on the synthesis design, the products of a combinatorial synthesis, referred to as a library, may be either unbiased or biased toward an intended target. Unbiased libraries are generally prepared to maximize chemical diversity around a central core structure or scaffold. Often containing 10,000 to 30,000 compounds each, these libraries are encoded and prepared by a combinatorial methodology known as mix-and-split, which produces compounds as mixtures. The preparation of these large libraries requires robust synthetic methodology that will accommodate reactants (building blocks) with diverse structures. Biased libraries tend to be smaller in size, ranging from 100 to 2,500 compounds. They are prepared using synthetic methodology that produces collections of discrete compounds (parallel synthesis) or pools of five to 10 compounds per pool (mix-and-split synthesis). Compounds in biased libraries are rationally designed to contain structural motifs or pharmacophores that are presumed to be beneficial for activity on the intended target. Screening is conducted in microtiter assay plates containing from 96 to 864 wells per plate. For in vitro assays, high-density formats (864 wells per plate) are preferred. The higher density format allows for testing higher concentrations and fewer compounds per well, which leads to a more rapid identification of the active molecules. For in vivo assays, 96-well formats are preferred. Regardless of the microtiter plate format, multiple beads are distributed into plates by robotic pipetting, and single beads are distributed via robot-controlled suction pipets. Test compounds are cleaved from the beads and transferred in solvent to assay plates. Required reagents are added to the plate to initiate the assay. A wide range of in vitro and in vivo herbicide, insecticide, and fungicide assays can be conducted in microtiter plates.
Plant diversity: new insights from molecular biology and genomics technologies
- Marie Jasieniuk, Bruce D. Maxwell
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 257-265
-
- Article
- Export citation
-
Technological advances in molecular biology have contributed substantially to our understanding of plant genetic diversity. Early studies of allozyme variation employing protein electrophoresis revealed that plant populations have high levels of genetic diversity, most of the variation at polymorphic loci is found within populations, and geographic range and breeding system explain the largest proportion of variation in genetic diversity. With the discovery of restriction endonucleases, the first DNA-based markers allowed the detection of variation in DNA sequences in plant population studies. More recently, techniques that utilize the polymerase chain reaction have allowed a more representative assessment of genetic variation in plants by screening multiple loci distributed throughout the genome. The analyses reveal sufficient polymorphism for the examination of fine-scale genetic differences among individuals. Information on plant genetic diversity is also emerging from studies of plant genome structure. Comparative genetic mapping studies of members of the Brassicaceae, Poaceae, and Solanaceae show that gene content is highly conserved between closely related species, although gene order on a chromosomal segment may differ between species. Comparative sequencing studies reveal higher degrees of diversity at the microstructural (less than 1 million base pairs) level than predicted at the genetic map level and suggest that genes are densely packed in gene-rich regions, rather than randomly distributed along chromosomes in species with large genomes. Sequencing of the entire genomes of rice and Arabidopsis thaliana will help identify genes controlling agronomically important traits, improve our understanding of genetic variation for fitness-related traits in wild plant populations including weed species, resolve evolutionary relationships among plant taxa, and potentially revolutionize current ideas on plant diversity and evolution.
From inhibitors to target site genes and beyond—herbicidal inhibitors as powerful tools for functional genomics
- Rui-Guang Zhen, Bijay K. Singh
-
- Published online by Cambridge University Press:
- 20 January 2017, pp. 266-272
-
- Article
- Export citation
-
With rapid progress being made in deciphering plant genomic sequences, determining the function of these genes is one of the main challenges that plant molecular biologists face today. Herbicidal inhibitors have been very useful for understanding gene function in at least two examples, represented by herbicidal inhibitors of hydroxyphenylpyruvate dioxygenase (HPPD) and deoxyxylulosephosphate reductoisomerase (DXR). In the first, an albino mutant of Arabidopsis isolated during the study of carotenoid biosynthesis was found to have an intact carotenoid biosynthetic pathway. A number of “bleaching herbicides” in development at about the same time (e.g., sulcotrione) produced similar symptoms by strongly inhibiting HPPD, a key enzyme in plastoquinone biosynthesis. Examination of the Arabidopsis mutant revealed that the HPPD gene had been inactivated in the albino plants. Inhibition of the HPPD pathway also led to reduced levels of tocopherol (vitamin E), an end product of the pathway. Further studies and manipulation of the pathway produced plants with significantly higher levels of vitamin E. This result is a clear demonstration of how an herbicidal inhibitor was able to lead to the identification of a gene that was responsible for a particular phenotype. As a second example, identification of fosmidomycin as a specific inhibitor of DXR in the recently elucidated nonmevalonate pathway of isopentenyl pyrophosphate (IPP) biosynthesis was instrumental in furthering the understanding of an important route to synthesis of many important terpenoid products.