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Appendix 7 - Online Resources

Published online by Cambridge University Press:  15 October 2021

Bal Ram Singh
Affiliation:
Institute of Advanced Sciences, USA
Raj Kumar
Affiliation:
Institute of Advanced Sciences, USA
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Summary

For the facilitation of students and readers relevant on-line resources have been listed below:

1. Protein structure prediction model including homology modeling, protein threading, and secondary structure prediction:

http://www.scfbioiitd.res.in/bhageerath/bhageerath_h.jsp

http://www.reading.ac.uk/bioinf/IntFOLD/

http://raptorx.uchicago.edu/

http://www.cbs.dtu.dk/services/CPHmodels/

https://arquivo.pt/wayback/20160514083149/http://toolkit.tuebingen.mpg.de/hhpred

https://toolkit.tuebingen.mpg.de/tools/hhpred

http://protein.ict.ac.cn/FALCON/

http://bioinf.cs.ucl.ac.uk/psipred/

https://www.predictprotein.org/

2. Protein yield and size:

https://www.expasy.org/resources/search/keywords:gel%20electrophoresis

3. Western blot:

https://www.licor.com/bio/image-studio-lite/

4. Antigen prediction tool:

https://www.genscript.com/antigen-design.html

http://tools.immuneepitope.org/bcell/

https://www.expasy.org/resources/search/keywords:epitope

5. Epitope analysis and mapping tool:

https://www.integralmolecular.com/epitope-mapping/?gclid=EAIaIQobChMIjcaZks-76wIVEovICh1NKwUHEAAYASAAEgIauvD_BwE

http://tools.iedb.org/main/

6. ELISA software and data analysis:

https://www.elisaanalysis.com/

https://www.mybiosource.com/my_assay_data_analyzing_software

7. 3D view inside the cell:

http://sciencenetlinks.com/tools/icell-app/

https://edshelf.com/tool/3d-cell-simulation-and-stain-tool/

8. Construction of cell membrane:

https://www.wisc-online.com/learn/natural-science/life-science/ap1101/construction-of-thecell-membrane

9. Analysis of mitotic defects, segmentation, tracking, feature extraction:

http://www.bioquant.uni-hd.de/bmcv/genomeresearch

http://www.csie.ntu.edu.tw/∼cjlin/libsvm

https://github.com/bnoi/MAARS/tree/master/doc/demos

10. Confluency measurement and evaluation:

https://opencirrus.org/

http://www.samba.org/ftp/rsync/rsync.html

https://doi.org/10.1371/journal.pone.0027672.g003

https://doi.org/10.1371/journal.pone.0027672.g004

https://doi.org/10.1371/journal.pone.0027672.t002

11. Enzyme kinetic analysis and rate analysis:

https://icekat.herokuapp.com/icekat

https://github.com/SmithLabMCW/icekat/blob/master/icekat/test.csv)

12. Designing enzymes:

https://www.creative-biolabs.com/computer-aided-enzyme-design.html

https://www.rosettacommons.org/software

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Publisher: Cambridge University Press
Print publication year: 2022

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